RNA id: TU2211970


Basic Information

Item Value
RNA id TU2211970
length 250
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1933655
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42742417 ~ 42743207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACGTAGCAGGTCTATACTACGTAGCAGGTCTATTCCAGAGGTCTATACTACGTAGCAGGTCTACACTACGTAGCAGGTCTACACTACGTAGCAGGTTTGAGGAGTAAgcgaggtaactttggtcaacttGAGTTCATTTCGGGATAACCAGTCATACGAAAGTGGCTCACCTTctagccaggtacatttctatggcaacgaatccttcagaactaacccgctccagggcaggctaactcaCTGCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211969 lncRNA upstream 823 42741302 ~ 42741594 (+) True G1933654
TU2211964 lncRNA upstream 19698 42722497 ~ 42722719 (+) True G1933651
TU2211963 lncRNA upstream 22284 42719927 ~ 42720133 (+) True G1933650
TU2211958 lncRNA upstream 23274 42718915 ~ 42719143 (+) True G1933645
TU2211950 lncRNA upstream 50871 42691346 ~ 42691546 (+) True G1933637
TU2211977 lncRNA downstream 11354 42754561 ~ 42754974 (+) True G1933662
TU2211985 lncRNA downstream 34890 42778097 ~ 42778911 (+) True G1933670
TU2211988 lncRNA downstream 37564 42780771 ~ 42781068 (+) True G1933673
TU2212017 lncRNA downstream 133687 42876894 ~ 42877720 (+) True G1933702
TU2212038 lncRNA downstream 183853 42927060 ~ 42931949 (+) True G1933716
XM_036962011.1 mRNA upstream 406947 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 408960 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 502078 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 663687 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1475138 41266767 ~ 41267279 (+) True LOC118944044
XM_036961315.1 mRNA downstream 323080 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 323080 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 556321 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 556322 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA downstream 556322 43299529 ~ 43420475 (+) True bcl9l
TU2211865 other upstream 207434 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 207434 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 241427 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 352156 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 377157 42361256 ~ 42365260 (+) True G1933231
TU2212382 other downstream 414896 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 690241 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 2357095 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 2358917 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 2360925 45104132 ~ 45104500 (+) True G1935696

Expression Profile