RNA id: TU2212313


Basic Information

Item Value
RNA id TU2212313
length 436
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1933938
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43004194 ~ 43004629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtactgcatcactgcttggtactattcagagtggtttacagtaccacatcactgcttggtactatccagagtggtttacagtaccacatcactgcttggtactattcagagtggtttacagtaccacatcactgcttggtactatccagagtggtttacagtaagacatcactgcttggtactatccagagtggtttacagtactgcatcactgcttggtactatccagagtggtttacagtaagacatcactgcttggtactatccagagtggtttacagtaagacatcactgcttggtactatccagagtggtttacagtactgcatcactgcttggtactatccatagtggtttacagtaagacatcactgcttggtactatccagagtggtttacagtaagacatcactgcttggtactatccatagtGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212310 lncRNA upstream 2322 43001623 ~ 43001872 (+) True G1933935
TU2212309 lncRNA upstream 5116 42998878 ~ 42999078 (+) True G1933934
TU2212052 lncRNA upstream 27457 42976434 ~ 42976737 (+) True G1933729
TU2212038 lncRNA upstream 72245 42927060 ~ 42931949 (+) True G1933716
TU2212017 lncRNA upstream 126474 42876894 ~ 42877720 (+) True G1933702
TU2212319 lncRNA downstream 24171 43028800 ~ 43046299 (+) False G1933942
TU2212318 lncRNA downstream 27269 43031898 ~ 43032439 (+) True G1933942
TU2212317 lncRNA downstream 32274 43036903 ~ 43037533 (+) True G1933941
TU2212328 lncRNA downstream 52602 43057231 ~ 43123215 (+) True G1933951
TU2212343 lncRNA downstream 74590 43079219 ~ 43080288 (+) True G1933963
XM_036961682.1 mRNA upstream 219034 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 668724 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 670737 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 763855 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 925464 42023482 ~ 42078730 (+) True LOC110512028
XM_036961315.1 mRNA downstream 61658 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 61658 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 294899 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 294900 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA downstream 294900 43299529 ~ 43420475 (+) True bcl9l
TU2211865 other upstream 469211 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 469211 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 503204 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 613933 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 638934 42361256 ~ 42365260 (+) True G1933231
TU2212382 other downstream 153474 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 428819 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 2095673 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 2097495 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 2099503 45104132 ~ 45104500 (+) True G1935696

Expression Profile