RNA id: TU2212319


Basic Information

Item Value
RNA id TU2212319
length 277
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G1933942
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43028800 ~ 43046299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagctctcctcttgtCTATatagctctcctctagtctatacagctctcctctagtctccTCAGCTctcatctagtctacacagctctcctctagtctactcagctctcatctagtctacacagctctcctctagtctacacagctctcctctagtctatacagctctcatatagtctacacagctctcctctagtctacacaactctcctctagtctatacagctctcctctagtctatacagctctcctctagtctacacagctctcctctagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212313 lncRNA upstream 24171 43004194 ~ 43004629 (+) True G1933938
TU2212310 lncRNA upstream 26928 43001623 ~ 43001872 (+) True G1933935
TU2212309 lncRNA upstream 29722 42998878 ~ 42999078 (+) True G1933934
TU2212052 lncRNA upstream 52063 42976434 ~ 42976737 (+) True G1933729
TU2212038 lncRNA upstream 96851 42927060 ~ 42931949 (+) True G1933716
TU2212328 lncRNA downstream 10932 43057231 ~ 43123215 (+) True G1933951
TU2212343 lncRNA downstream 32920 43079219 ~ 43080288 (+) True G1933963
TU2212353 lncRNA downstream 88536 43134835 ~ 43170632 (+) False G1933973
TU2212355 lncRNA downstream 101675 43147974 ~ 43148379 (+) True G1933974
TU2212354 lncRNA downstream 123917 43170216 ~ 43170632 (+) True G1933973
XM_036961682.1 mRNA upstream 243640 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 693330 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 695343 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 788461 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 950070 42023482 ~ 42078730 (+) True LOC110512028
XM_036961315.1 mRNA downstream 19988 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 19988 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 253229 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 253230 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA downstream 253230 43299529 ~ 43420475 (+) True bcl9l
TU2211865 other upstream 493817 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 493817 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 527810 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 638539 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 663540 42361256 ~ 42365260 (+) True G1933231
TU2212382 other downstream 111804 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 387149 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 2054003 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 2055825 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 2057833 45104132 ~ 45104500 (+) True G1935696

Expression Profile