RNA id: TU2212650


Basic Information

Item Value
RNA id TU2212650
length 1948
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1934198
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43418644 ~ 43468153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctctctctctccccCTCCCTCTACCTACTTCCTTTCCTATCCACCTCCTTTATGTTGTCCTTTTGTTTGTAGCTCTTTGTATGAAGTGCCTTAACAAGCAGCTTGTTCTGAAGTAATAACCCGTTCTCCGTCTGTGGAAACATCCGTCCACCCACGGTGTTACTCATCACATAACATCACTTTATGTTCCGCACATTGAATCAACACCCATCCTACCACTTTTGATGTTCAGTAAGACACATTGCATCAAGGTTTAGGCCGTTTTTCTATAGTTGGATGGAGGGTGGATGAAATATGATCTGCTGCTGGCTTGGCTGCAGGTCCCCAGAATATTGACGACTATATGAAGAGAATCCACGGCAGAGAAAGACCCTGGATGAAGATGACAGCTCAAGGAGCAGGATGTTTAGAGGCTCCTATTAGAACGCAGCCAGAGTGCAGACTagttcattagaatcctaacgtTCCTCCCCCTCGAGCTTCACAATCAGAACACTAAGAACTGATCTATTCTAGAACTGGAACGTTAAGTAGCTCCACCCTCCCTGGACTCTCCGGGGGTTCCTTCCTGTTCGGGAGGACTTATCTATCTACCGTGCGATGCAAACGAGAAGAAATGGGTGTTGTTCCTGTTGCAGTTTGACGTTCTTCTGGGTGGGCAGTTGGTCACTCCACTTTATTCTCCTTGATGTGCCACAGCTAAACCATCTTGGCACCCTGTACACTTTGTAAATACTTGATTTCATTTTTAATAGATTGTTTTAAAAACAAGTTTAAAAGGCTGGTTGACATGTTGAGGATGACGATGTGAGCTGATGCATCTTTTAAGTTTTGAATCTGATCAGGACTGGAGATTATATTTTTTCCCTTTCTACTCAAACCCCCTTTCACAGAATGAGCTGCAACGATGGCCTGTTTAGTCAGTGAAGTTCTGATTTCTAGAAGAGCACTCTGATGTAGTCTACGACCATTTAATTGTCACATTGTGTATGAAATGTGTTCCTTGTGCTTTTAGCCGAAGCACGGATCGAACTACAGTTTCACCCTTGACATTTGATAAACAATGCAGTTGTTCAACCCTGTTACATTAAGTTTAGATTTATTGTTGAAATAATATTCCTCTATTTTCCTTCCAGTGTTGACAGGATGTCCCTCTAGACAGGTGGAATAAGGATCAGAGCATCATAATGTTATTTTGATCACCAGCCTTTCCTCCTTCGACTGACTCAACAAGCCACTCCCCACAATCCCTGCAAAGAGAGtgactgttattattattattattattaattattattattataaaaacaAAAGGTAAATGAATATTGTATCATGTAGTTGAAGTGACTTGCTGCAGTGCAGCTCAGATTGTCTCTGAGGAGTGATGTATATGAATGGGTATCTGATCTACACTCTAGCTGTTAGGTTGGTCTGTGTGATCGGCAATGGGGACGTCACCATAGCTGCAAGTATTAGACAACATTATACGTTTTGTATCTTTCTTCCCTTACGTTAAACAGTGGCTTTGTATCTGAACAAACCATCAGACCCCTTCAATGTAGCAGGGAAAAAAGTGTTTCTGTGCATCACGCAAGTCATCTGGTTTGAATTACACACCAGTTTTTGGGTTGTGTTGTACAATATGAAGTGAAATCCTTGGTGGTGTGGACGGACTGCGTTTCAGTGAGTTATTATGGTAACGGGCCAACACACCGACTGCTAGGCCGTCCCTGTACTGAAACCAGGGACCACAGATGTGCTTAGTGTTTCATTTTGTTTTAACCCTAAACCGGAGGATAATAGACTTGCAGTTTGGGAGGTATTAAAAACCATGTATTGCCCTCTTTACACCAGAGTTGGGTGAAGATCCTTGTCTGAGCCTAGTTAAGGTGAAAGCCTTGAAGGATTCCTGGGGAGGGGGGTGAGGTGGTGGTGTCTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212630 lncRNA upstream 9334 43409043 ~ 43409310 (+) True G1934192
TU2212581 lncRNA upstream 94671 43323347 ~ 43323973 (+) True G1934152
TU2212564 lncRNA upstream 111968 43305996 ~ 43306676 (+) True G1934142
TU2212557 lncRNA upstream 154560 43263882 ~ 43264084 (+) True G1934136
TU2212422 lncRNA upstream 198344 43219756 ~ 43220300 (+) True G1934027
TU2212634 lncRNA downstream 1370 43469523 ~ 43471503 (+) False G1934195
TU2212633 lncRNA downstream 1442 43469595 ~ 43471503 (+) True G1934195
TU2212715 lncRNA downstream 108522 43576675 ~ 43579791 (+) False G1934242
TU2212721 lncRNA downstream 108522 43576675 ~ 43579791 (+) True G1934242
TU2212727 lncRNA downstream 118588 43586741 ~ 43587197 (+) True G1934245
XM_036961315.1 mRNA upstream 205932 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA upstream 205932 43066287 ~ 43212712 (+) True cdon
XM_036961682.1 mRNA upstream 633484 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 1083174 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 1085187 42140069 ~ 42333457 (+) False LOC110503413
XM_036961767.1 mRNA downstream 4571 43472724 ~ 43491902 (+) True treh
TU2212382 other upstream 260078 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 883661 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 883661 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 917654 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 1028383 42389427 ~ 42390261 (+) True G1933255
TU2214548 other downstream 1632149 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1633971 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1635979 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1820357 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 2017190 45485343 ~ 45488875 (+) False G1936028

Expression Profile