RNA id: TU2213077


Basic Information

Item Value
RNA id TU2213077
length 219
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1934519
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43730220 ~ 43730438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTAactctggattgtaaactgtcctgggcaaaacatattgatacaacagtagctaaaatgggagaagtctgtctacaataaagtgatgctctgccttcttaacatcactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcagatcctacaggccctagtttctaccttcttaacaacactatcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213014 lncRNA upstream 31803 43697779 ~ 43698417 (+) True G1934463
TU2212996 lncRNA upstream 53093 43676444 ~ 43677127 (+) False G1934448
TU2212997 lncRNA upstream 53093 43676444 ~ 43677127 (+) False G1934448
TU2212998 lncRNA upstream 53093 43676444 ~ 43677127 (+) True G1934448
TU2212982 lncRNA upstream 62702 43667301 ~ 43667518 (+) True G1934437
TU2213079 lncRNA downstream 743 43731181 ~ 43731418 (+) True G1934521
TU2213123 lncRNA downstream 62765 43793203 ~ 43795482 (+) True G1934551
TU2213186 lncRNA downstream 97151 43827589 ~ 43828335 (+) True G1934612
TU2213188 lncRNA downstream 100692 43831130 ~ 43831432 (+) True G1934614
TU2213192 lncRNA downstream 110390 43840828 ~ 43841077 (+) True G1934618
XM_036961767.1 mRNA upstream 238318 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 264975 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 264977 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 294868 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 571654 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 1195237 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 1195237 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 1229230 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 1369864 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1371686 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1373694 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1558072 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 1754905 45485343 ~ 45488875 (+) False G1936028

Expression Profile