RNA id: TU2213187


Basic Information

Item Value
RNA id TU2213187
length 496
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1934613
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43827802 ~ 43828563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATGTCAAACTGAGCAGCATGGATTCAACAAAAGTATAGTGATGTGGttattgcatcccaaatagcagcctattccccacatagttcactactattgaccagggctctggAACTATGTAGGAAACAGTGTTGCCATTTGTGACGCCTTCATAGAACTTCATATTTTAACAGGAAGACTTCTTtcttttttagggggggggggggggaccttcTCTGTCTGCCGTTGATGATGGAAGTAGCATTTCTAAATTGTGGGTCTCGTACCACCTCTTTTGAGCTACAGTCGATCGCATCACATATGTATCTTACTCTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCATGGACATACTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCATGGATATACTACTACACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213180 lncRNA downstream 8100 43819418 ~ 43819702 (-) True G1934606
TU2213178 lncRNA downstream 10650 43816705 ~ 43817152 (-) True G1934604
TU2213169 lncRNA downstream 16046 43811541 ~ 43811756 (-) True G1934595
TU2213168 lncRNA downstream 16272 43811314 ~ 43811530 (-) True G1934594
TU2213125 lncRNA downstream 31808 43746201 ~ 43795994 (-) True G1934552
TU2213218 lncRNA upstream 36708 43865271 ~ 43930763 (-) True G1934644
TU2213221 lncRNA upstream 38705 43867268 ~ 43876029 (-) True G1934645
TU2213227 lncRNA upstream 53316 43881879 ~ 43883864 (-) True G1934649
TU2213228 lncRNA upstream 88404 43916967 ~ 43975854 (-) True G1934650
TU2213245 lncRNA upstream 158790 43987353 ~ 43987902 (-) True G1934667
LOC118944048 mRNA downstream 173095 43652793 ~ 43654707 (-) True LOC118944048
XM_036961572.1 mRNA downstream 177493 43649406 ~ 43650309 (-) True LOC118944047
XM_036961571.1 mRNA downstream 323152 43502301 ~ 43504650 (-) True LOC118944046
XM_036962030.1 mRNA downstream 388523 43434126 ~ 43439279 (-) False LOC110503290
XM_036961057.1 mRNA upstream 498225 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA upstream 533596 44362159 ~ 44898432 (-) False LOC118943990
XM_036961061.1 mRNA upstream 764894 44593457 ~ 44595644 (-) True LOC118943991
XM_036961059.1 mRNA upstream 774066 44602629 ~ 44898432 (-) True LOC118943990
XM_036961713.1 mRNA upstream 1472751 45301314 ~ 45370352 (-) False LOC110503298
TU2212512 other downstream 627987 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 673835 43119965 ~ 43153967 (-) True G1934061
TU2211802 other downstream 1427475 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 1751863 42073127 ~ 42075939 (-) True G1933401
TU2211565 other downstream 1824374 41988837 ~ 42003428 (-) True LOC118944009
TU2214020 other upstream 428733 44257296 ~ 44258661 (-) True G1935283
TU2214166 other upstream 692592 44521155 ~ 44521439 (-) True G1935421
TU2214215 other upstream 750459 44579022 ~ 44585392 (-) False G1935467
TU2214897 other upstream 1567469 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 1567469 45396032 ~ 45397761 (-) True G1935978

Expression Profile