RNA id: TU2213241


Basic Information

Item Value
RNA id TU2213241
length 256
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1934663
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43984026 ~ 43984281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttatgatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctatgtttcttcctaggttttggcctttctagggagtttttcctagtcaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213240 lncRNA upstream 7 43983782 ~ 43984019 (+) True G1934662
TU2213236 lncRNA upstream 2206 43981601 ~ 43981820 (+) True G1934658
TU2213202 lncRNA upstream 128043 43855764 ~ 43855983 (+) True G1934628
TU2213192 lncRNA upstream 142949 43840828 ~ 43841077 (+) True G1934618
TU2213188 lncRNA upstream 152594 43831130 ~ 43831432 (+) True G1934614
TU2213246 lncRNA downstream 5597 43989878 ~ 43990121 (+) True G1934668
TU2213260 lncRNA downstream 27974 44012255 ~ 44018654 (+) False G1934681
TU2213268 lncRNA downstream 30487 44014768 ~ 44017208 (+) True G1934681
TU2213289 lncRNA downstream 48069 44032350 ~ 44032584 (+) True G1934695
TU2213291 lncRNA downstream 48816 44033097 ~ 44033543 (+) True G1934697
XM_036961767.1 mRNA upstream 492124 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 518781 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 518783 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 548674 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 825460 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 1449043 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 1449043 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 1483036 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 1116021 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1117843 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1119851 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1304229 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 1501062 45485343 ~ 45488875 (+) False G1936028

Expression Profile