RNA id: TU2213439



Basic Information


Item Value
RNA id TU2213439
length 453
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1934821
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44156851 ~ 44190754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gactagtaaatgtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtcctctaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatataggactagaataggtctgttaatataggactagtaaaggtctgttaatacaggactagtaaaggtcctctaatacaggactagtaaaggtctgttaatacagaactattaaaggtatgttaatacaggactagtaaaggtcctctaatacaggactagtaaaggtctgttaatacaggactagtaaaggtcctctaatacaggactagtaaaggtcctctaatacaggactagtaaaggtctgttaatacaggactagtaaaggtcctctaatacaggactagtaaaggtctattaatacaggactagtaaaggtctgttaatacaggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2213381 lncRNA downstream 75692 44082971 ~ 44084616 (-) True G1934783
TU2213304 lncRNA downstream 105029 44055008 ~ 44055279 (-) True G1934710
TU2213296 lncRNA downstream 117935 44041570 ~ 44042373 (-) True G1934702
TU2213288 lncRNA downstream 130765 44029282 ~ 44029543 (-) True G1934694
TU2213258 lncRNA downstream 155133 44004921 ~ 44005175 (-) True G1934679
TU2213469 lncRNA upstream 36931 44226645 ~ 44227004 (-) True G1934847
TU2213480 lncRNA upstream 43094 44232808 ~ 44233263 (-) True G1934858
TU2213493 lncRNA upstream 51090 44240804 ~ 44241279 (-) True G1934871
TU2213496 lncRNA upstream 52870 44242584 ~ 44242803 (-) True G1934874
TU2213511 lncRNA upstream 58230 44247944 ~ 44248229 (-) True G1934885
LOC118944048 mRNA downstream 505601 43652793 ~ 43654707 (-) True LOC118944048
XM_036961572.1 mRNA downstream 509999 43649406 ~ 43650309 (-) True LOC118944047
XM_036961571.1 mRNA downstream 655658 43502301 ~ 43504650 (-) True LOC118944046
XM_036962030.1 mRNA downstream 721029 43434126 ~ 43439279 (-) False LOC110503290
XM_036961057.1 mRNA upstream 137074 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA upstream 172445 44362159 ~ 44898432 (-) False LOC118943990
XM_036961061.1 mRNA upstream 403743 44593457 ~ 44595644 (-) True LOC118943991
XM_036961059.1 mRNA upstream 412915 44602629 ~ 44898432 (-) True LOC118943990
XM_036961713.1 mRNA upstream 1111600 45301314 ~ 45370352 (-) False LOC110503298
TU2212512 other downstream 960493 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1006341 43119965 ~ 43153967 (-) True G1934061
TU2211802 other downstream 1759981 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 2084369 42073127 ~ 42075939 (-) True G1933401
TU2211565 other downstream 2156880 41988837 ~ 42003428 (-) True LOC118944009
TU2214020 other upstream 67582 44257296 ~ 44258661 (-) True G1935283
TU2214166 other upstream 331441 44521155 ~ 44521439 (-) True G1935421
TU2214215 other upstream 389308 44579022 ~ 44585392 (-) False G1935467
TU2214897 other upstream 1206318 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 1206318 45396032 ~ 45397761 (-) True G1935978

Expression Profile