RNA id: TU2214003


Basic Information

Item Value
RNA id TU2214003
length 3305
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1935271
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44314500 ~ 44341827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttgTCCTCCATATCCTCCTCCCGCACTTCCTAcccctcctccacatcctcctcctcctccacatcctcctcctcccctagttttaatattatttacagtataTGCTCAGGGATTCTTGAAAGAAGTTACAGTTTCATTTGACAcatgtgaaatatatattttgtcaGACCGAATTATGAGCTATCAAAGCATGTAAAAGAAAATCGTATTAATTTGTTTCACCTCTGTCAGATACCATAAAAGGCATTGCACTTTAACAATTCTTATTTTGATTTAGACTTATAGTTTTAGCCTATGTTGCAGAacagaaaaacatattttttctgAATATTAACAAAACATGGATCTTAAGTGGTTAGCCGACAGTGACAGATACTCTGAACAGATACTCTGAACAGATACTCTGAACAGATACTCTGAACATAAAAGTTCAATACAAACATTAGTAAAATAAATTATTCATTCTAAAATCCCCAGTAAACAAATTTGATTGAGTTCATGTTTTACATTGTCTACAAAAATTGCATGTTTAATCTTCATTCAAGTGGAGTATAAttgtgattatttatttacttaccttACCTCCTTTATGACTAAAACCTCATTAATGCAACACGCTGTATTTGAACCTAAATGAATATCCTATCTTAATCTGTAAGGCAAATGGAGTAGACAGTTGATGGTTGGGAGCACGGGGATTCCAATATTGTTTGTTTAAATTGATCAAAAGTAGAGAACTATCCAGAACATGAGTGGTCCTGTTGCACTTCATGTACTTCAAGTCCTTATGGTATAAGTGACCCTGCTCATTCCTGTTTCATTTAGGCTTTTGACCAACCTGACGGAGATCAGACACAACCCATATTATTTAGAGTCACAGAGGACTATCGTAATAAACTGGATAAGATCGGTTTCCAGTGAAGTTTGAAATTGGGATCCTTTGACAAGGGCATTTCCAGGCATAGAGCCGACGTGGGAATTCATCATATTTAAAGTATTTAGGAAAAGTGTGCACACAAATCTTTACCCTATAAAATTCCCCGCCCAAAATATATAGATTTTTAAAATCTcaaataatgcaacaaaataaatTCTTTGTCCAGACTTTCAAGAATCCCTTTGATACAAACTGCTGCAGCAGTGGACACTAAACAGTTACACACTTAGAAGAAAGGGttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaagggccctgattggttagttccaaacgcgttcctcggctgtccccataaaAGGGCCCTGATTGTTTAGTTCCAAACTGGTTCCTCGGCTGTCCCAATAGAAGGGCCCTGATTGGTTAGTTCCAAACTGGttcctcggctgtccccatagaagggcCCAGATTGGTTAGTTCCAAACGCAttcctcggctgtccccatagaagggccctgattggttagttccaaacgctttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcattcctcggctgtccccatagaagggccctgattggttagttccaaacgtgttcctcggctgtccccatagaagggcCCTGATTGGTTAGTTCCAAACGCGTTCCTCGGCTGCCCTCATAGAAGGACCCTGATTGGTTAGTTCCAAACGCGttcctcggctgtccccatagaaggactctgattggttagttccaaacgcgttcctcggctgtccccatagaagggtCCTGATTGGTTAGTTCCAAACGCGTTCCTCGGCTGCCCTCATAGAAGGACCCTGATTGGTTAGTTCCAAACGCAttcctcggctgtccccatagaagggcCCTAATTGGTTAGTTCCAAACGCGttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaagggccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcctcggctgtccccatagaaggacCCTGATTGGTTAGTTCCAAATGCGTtcctcagctgtccccatagaaggacCCTGATTGGTTAGTTCCAAATGCGttcctcggctgtccccatagaaggaccctgattggttagttccaaacgcgttcttcggctgtccccatagaaggacCCTGATTGGTTAGTTCCAAACGCGTTCCTCGGCTGCACTCATTGAAGGACCCTGATTGGTTACACGTCCTGTCGGCTGTCggaaccttttggttccaggtagaacccttttgggtgaGACAGCTGAAGAATCAATTTTTTACTAAGAGTGTAGGATGTCTCGGGGTATTGGCAAAACAACAATTGTCCAACAATTGCTCTTTAGTGTCTACTAGCGATAGTATAGCACAAAAATCTATATAAAAAACAAACGTTTTAGTGCCCACTAAATATGCCTCCTATTGATATTCAGATATCTCCTTTTGAATGTTCTACTGAAGATGATTTGCCATGCATTTACTTATCATCTCTTTCCTCTTATTTTGTACGTTTTGGTTGCATTTTTTAAACGTAGgtgtttttatttcattattttatcCGTGGAAGGAGCATTTCTGATCTGGATCAATGTGGAAACATGAGCTtgtaatcattgtgtgtgttgCCACTGCTAGGGAACTCTAAAATACCTTATGTGAGACATTTAAACTTGTATTTTTTTACATGGAATTTATGTTTGATGTAAATATTATTAACAATGTATCTGATGTGAGAAAAGAAACTGCTGCCGTTTTAAACATTAAACTTCACAACCTCTCCACGTTACAGTGTCTGTAATGTTTGTTTCTTGAACCTGGCGGAAATCACACTATACATTTATTATGACCTCACCTTAGTTCAAACTAGTCGGTGGGTGTCAAATCAGATATTGACTTCTAGTAATACGAATGGACACGTATATATTTCACCCAGAAAATTACATCTAATGTATGAGATTTCATCCTTCTGTGTAGTCCTGGTTCATATGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214049 lncRNA downstream 3953 44310061 ~ 44310547 (-) True G1935310
TU2214046 lncRNA downstream 7025 44307257 ~ 44307475 (-) True G1935307
TU2213511 lncRNA downstream 66271 44247944 ~ 44248229 (-) True G1934885
TU2213496 lncRNA downstream 71697 44242584 ~ 44242803 (-) True G1934874
TU2213493 lncRNA downstream 73221 44240804 ~ 44241279 (-) True G1934871
TU2214084 lncRNA upstream 76598 44397002 ~ 44397309 (-) True G1935343
TU2214098 lncRNA upstream 99585 44419989 ~ 44420297 (-) True G1935356
TU2214099 lncRNA upstream 100160 44420564 ~ 44420765 (-) True G1935357
TU2214102 lncRNA upstream 102319 44422723 ~ 44423033 (-) True G1935360
TU2214107 lncRNA upstream 107502 44427906 ~ 44428288 (-) True G1935364
LOC118944048 mRNA downstream 659793 43652793 ~ 43654707 (-) True LOC118944048
XM_036961572.1 mRNA downstream 664191 43649406 ~ 43650309 (-) True LOC118944047
XM_036961571.1 mRNA downstream 809850 43502301 ~ 43504650 (-) True LOC118944046
XM_036962030.1 mRNA downstream 875221 43434126 ~ 43439279 (-) False LOC110503290
XM_036961057.1 mRNA upstream 6384 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA upstream 41755 44362159 ~ 44898432 (-) False LOC118943990
XM_036961061.1 mRNA upstream 273053 44593457 ~ 44595644 (-) True LOC118943991
XM_036961059.1 mRNA upstream 282225 44602629 ~ 44898432 (-) True LOC118943990
XM_036961713.1 mRNA upstream 980910 45301314 ~ 45370352 (-) False LOC110503298
TU2214020 other downstream 55839 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 1114685 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1160533 43119965 ~ 43153967 (-) True G1934061
TU2211802 other downstream 1914173 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 2238561 42073127 ~ 42075939 (-) True G1933401
TU2214166 other upstream 200751 44521155 ~ 44521439 (-) True G1935421
TU2214215 other upstream 258618 44579022 ~ 44585392 (-) False G1935467
TU2214897 other upstream 1075628 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 1075628 45396032 ~ 45397761 (-) True G1935978

Expression Profile