RNA id: TCONS_00053665


Basic Information

Item Value
RNA id TCONS_00053665
length 561
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_027252
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16794418 ~ 16797485 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACCCCAAGCTATGTTATATCTGAAAGGCACACAGGGACGGCGCTTTGTGTCAGAAGACAGAAATGAAGGGGACCTGTATGATACAATACGCTTAGAATCCCGCAGTCAAAACACAGAAAACCTGAGCATCTCTAAAGCAGCGGCGTTTCTCCTGAACATCCTCCAGCAGGCCAGAGATGAAGACGAGCCGTACTGAAGAACATCAGCTCAACACCGCCAGCTTTCAGCTTCTCTAATGTGCcgttatttgtgtttgtttcattCCACCGGGACTGATTATTTAAGGAATACAGCAGAGACTGATAGGGAGGTATTTCTCGCTTCCTATGGATTCATTTCAGCTGATATAATGAGTTGTTTTTATTCAAGACGTATCAACTTGGAAAAGAGATTATTTACGGCGAGTGCGATTCTGTGTAATATAAATGAACTGTACAGTTTCTGTTTTTCTTCCTTTTGAGTTTCTCATGTTAAAAAATCGACACTTGATGCTctgtaaaatacatatttgagAATGTCTGAACATTTTCTCTATCAATTAAACTAAATTTGCACTGA

Function

GO:

id name namespace
GO:0003084 positive regulation of systemic arterial blood pressure biological_process
GO:0035814 negative regulation of renal sodium excretion biological_process
GO:0032099 negative regulation of appetite biological_process
GO:1903999 negative regulation of eating behavior biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:1904306 positive regulation of gastro-intestinal system smooth muscle contraction biological_process
GO:0010459 negative regulation of heart rate biological_process
GO:0044539 long-chain fatty acid import into cell biological_process
GO:0042593 glucose homeostasis biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051930 regulation of sensory perception of pain biological_process
GO:0030133 transport vesicle cellular_component
GO:0031045 dense core granule cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031765 type 2 galanin receptor binding molecular_function
GO:0031766 type 3 galanin receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-158 Predicted to enable neuropeptide hormone activity; type 2 galanin receptor binding activity; and type 3 galanin receptor binding activity. Involved in cholesterol homeostasis; glucose homeostasis; and triglyceride homeostasis. Acts upstream of or within negative regulation of eating behavior. Located in nucleus. Is expressed in several structures, including central nervous system; heart; liver; male organism; and pleuroperitoneal region. Orthologous to human SPX (spexin hormone).

Ensembl:

ensembl_id ENSDART00000132337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057703 lncRNA upstream 37652 16750256 ~ 16758036 (+) True XLOC_027246
TCONS_00057142 lncRNA upstream 42392 16752361 ~ 16753296 (+) True XLOC_027247
TCONS_00057702 lncRNA upstream 256726 16535258 ~ 16538962 (+) True XLOC_027243
TCONS_00057141 lncRNA upstream 420996 16374269 ~ 16374692 (+) True XLOC_027242
TCONS_00057701 lncRNA upstream 481789 16309076 ~ 16313899 (+) True XLOC_027239
TCONS_00057704 lncRNA downstream 42068 16839553 ~ 16844705 (+) False XLOC_027254
TCONS_00057705 lncRNA downstream 43568 16841053 ~ 16844705 (+) True XLOC_027254
TCONS_00057706 lncRNA downstream 166818 16964303 ~ 16966927 (+) True XLOC_027256
TCONS_00057707 lncRNA downstream 183934 16981419 ~ 16985283 (+) True XLOC_027257
TCONS_00057143 lncRNA downstream 293211 17090696 ~ 17095120 (+) True XLOC_027259
TCONS_00053662 mRNA upstream 3492 16787040 ~ 16792196 (+) False XLOC_027251
TCONS_00053663 mRNA upstream 4048 16787488 ~ 16791640 (+) True XLOC_027251
TCONS_00053661 mRNA upstream 9444 16784553 ~ 16786244 (+) True XLOC_027250
TCONS_00053660 mRNA upstream 13846 16777715 ~ 16781842 (+) True XLOC_027249
TCONS_00053659 mRNA upstream 22434 16768961 ~ 16773254 (+) True XLOC_027248
TCONS_00053666 mRNA downstream 29905 16827390 ~ 16828499 (+) True XLOC_027253
TCONS_00053667 mRNA downstream 88369 16885854 ~ 16906923 (+) False XLOC_027255
TCONS_00053671 mRNA downstream 447520 17245005 ~ 17251758 (+) False XLOC_027260
TCONS_00053675 mRNA downstream 447732 17245217 ~ 17251758 (+) False XLOC_027260
TCONS_00053674 mRNA downstream 447732 17245217 ~ 17251758 (+) True XLOC_027260
TCONS_00053652 other upstream 730952 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053651 other upstream 739911 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053646 other upstream 804598 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053633 other upstream 1575021 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 1719956 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053668 other downstream 101156 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 264495 17061980 ~ 17062097 (+) True XLOC_027258
TCONS_00053686 other downstream 556255 17353740 ~ 17363070 (+) False XLOC_027263
TCONS_00053689 other downstream 573201 17370686 ~ 17376220 (+) True XLOC_027263
TCONS_00053700 other downstream 874146 17671631 ~ 17689325 (+) False XLOC_027272

Expression Profile

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