RNA id: TU2213686


Basic Information

Item Value
RNA id TU2213686
length 3610
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1935033
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44598119 ~ 44603291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGGTGGTTCAGAATCAGAATCACATTATAGTGGTGGTTCAGAATCAGAATCAACACATTGTAGTGGTGGTTCAGAATCAGAATCATGTTGCTGGGTCTGCAGAGAAACATGTAACACTAATATTTggtttgcgtcccaaatagcaccctattccctatatagtgcactgctcaTTAGTAGTTTGCATTGTATGGGATAGGGTGCTTTTGAGATGAAACATTGGTCTCTACAGAATGATGAAATCCTGTCAGCCTCTGGCCAGCACATCATATCCCACCTCTCTACAAACACTGGCAAGGAGCCGTCTTCTCCTCTGATCTGTGAACACAAAGCCCGTCCTCCAAtacctcctcccaccagcctcccctGCAAACAACACCCATACATCCAACCCTCACATAAATCACATAAAAACAACACTTCATCTTTTCTCCCAGTTTAAAACGAGCCAGGTAAGTATCCTCTGTGCTTTGACTCCTGTCAAAAAGTCTTTGTCCTTTTTTGACAGAATTCCCACAACGTACTTAGTTTTTTGCCAATCATAATATTGTACTGTAGCTTGTGTGTGATGGACCTCAAAGCTGTGAGGACAAAGACTGTTTCTGCTGTGGACCTCAGCTACTGGCAAGCAAGATAGTGGGTTTAAAAAGCCAACCAATACAATGGCTCTCTAAAGGATGGTTGTATGCCCATCTACAGGTTCAGCTGCCAACACGTCAGGCAAAAATAACCATATTTTTTCTCCAGTATGAATCGATACAGAGCTGTTGCAATTTAATCTATGAAACAAAGACCATCACCCAatgaaaacaaacaacaacaaaaagaaaaaACAGAGCTTGACAAATTCCGGTGTGACAATATTTATCACAATATTTCTCTATTCCCTTTGCTTTTAAAAATGTTCTCTCTGAAGGCAGAGAAGCACACCCACGTTTAGCATTGTCCTCATTGTCCTCATTGTCCCAGGAGGCTCCTGCTAAAGGTGGCGTGAGTGGGAAGTACTGTAGCTAGTACCTTAGGGACAATTCATACAGTCACACAGGCCCAACATCACTCTGGAACCTTCTGTTGAGATCCACAGTGATCCAACGTGGCTAAAATAAGACATGATTACGATCGCTCAACAACCCAAAGACACATTTTAATTACGTAAAGAGTTCGGGTACACAGGTAGACCCTTTCAAGATGCAGATTATTGAATGGACTTTCTCAGAGCATCATtgaagtatttttgttgttgttgtcttgtctGTTGAAAACACTGGACACCCCTTAAGAAGTGAAGATGTCACACAAAGTGAATGTGGGATCCATTTAAGTGGTTCATGACAGCAGCCTTTctgccttctttctctctcctgctttCTCAGTGGAGCTAAAATGGCTGCCAAACTAAAATGGCCACTAAAACAACTCGGGCATCTGAATGTAGGGCACGTCGCGACGCATTCTCCTTCTATATCTACTGCCATCTCCTCTAGGCCTGTATGTATTACTGCCATGTCCACATGGCGTGTTGCGTTGACATGTGCCTGAGCTCTCAGTGCAGTGTGCACAGGCCTCATGATACCCTGAAGAGTACAGAGTTcttacataaaaaaaacatacatgtCTTTGGAGAGAAGCTAAAACATACATGTCTTTTTTTAGTTAGGTCTGGGAGGAGGCAAAAAATACATCATATACTCTAACACACAGTCAAGGGAGAATGGGGTAACCTGAGGCAAAGTTGAGCCGCCATACCTTGTTTCTATGAAACAATACACAAAATgaataatttgaccaaatatttggtaagaggtcatcatttcatggagaccgtgaaggaagaaaccacatgggaaAAGTGGTTAGCAAGTTGAGTCCAAAACACTGGTATTCACCAAGACAAATGAATTTATTGTGTtaagaggtttcatgatgcttgtatctaaattAAAGTAGATAATTAcaagattgttctatacatcagttctGGTCTGTATCAGCTTCAATGTGAGGTTATAAACCTGGCATGGAAGTACATCCTTGTAGCTGTATGGGCTAATAAAGTCAACATGTTTGTAGCTGTATGGGCTAATAAACTCAACATGTTTTTAGCTGTATGGGCTAATAAAGTCAacatgtttgccttggggtacgttgagccaatggttgagccaattgCAAGTAAGAGCTAATTGAAGTGCTTTCTCACCAGGCGTAATGCAAGGcatatgaggtaacaacagggcctggcctatgttaaaagAGGCTTAAAATGATTAAAATACCGTTagttgtgtttgggaaataaagatagacatggtaGAAAAAGTATTGGTTTTCGGTACAGACATTTGAAAGGCGGACATCATACCTGGAGTAAGTAGTGCCGAGAAACCACTTATTAaaaaacatcctgaaatatatgtagatatcttcgTTAGAAATAATCATTTATTTCCCTTGACGGAATGATGCTGAATGCACCAAAAATGTCTCAACTTACCCCAGTCTCCCCTACTACTATACTCTGTAGTATGGTGTGTTCTGCTGTAATACATGGGCGGAACCAGTCTTTACTAGTGTTGCTGGTCATACTGAATAAGAGACCATCTGTACAACTCCATCTATAGTTTGACATTTTACCCCCTAGACAACCTTTGACCCCTAGTTGTCCCCATAACATACAAAAACaagttatatatataaaaaaaatgcagaaaaggCAATGGTGATGAGaagaataataataaaacaatgtATCATACATCCAGTGTTGGACTTTCACAATGTGCTTAGCAAATACCTCATCTCTCCCAAGTCTCTATACATGTAATACATTTAGAATATCATGgaaaaacacacaacaataatCCACCTGTATTTTCCAAGTGACCAGATAACTCTTTCTGTCTGGCCTTCAAAAGTCAATGGGGGTTGGACATGAGTCCAATGGTAGTCAATGGTGGTTGGGCATGAGTCCAATGGAAGTCAATGGTGGTTGGGCATGAGTCCAATGGAAGTCAATGGTTTTTGGGCATGAGTCCAATGGAAGTCAATGGTTTTTGGGCATGAGTCCAATGGAAGTCAATGGTGGTTGGGCACGAGTCCAATGGAAGTCAATGGTTTTTGGGCATGAGTCCAATGGAAGTCAATGGTGGTTAGGCATGAGTCCAATGGTAGTCAATGGTGGTTGAACATGAGTCCAATGGAAGTCAATGTTGGTTAGGCATGAGTCCAATGACAAACTGTGTTTTGGATTATCTGCAGTTTCATCTCATGGAATTTCAATGTAATGTCATCTTTGACATGTTGATGATGAGCTCTTTAGGACTTGATGTTGCATGTTCTAAAGCTGATTTAGCTCACTGGGTGCTGATGGGCTGCGGGGTTGGGGTGGTACTACACAGAACTGCTCAGGgatgaggtggagggagggatgggatgaggtgttgtggtggtagtagtggtggtggtggtggtagtagtggtggtggtagtagtagtggtggtagtagtggtggtagtggtggtagtggtggtagtagtagtggtggtagtggtggtggtggtagtagtggtggtagtagtggtggtggtggtagtagtggtggtagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213691 lncRNA upstream 1042 44593457 ~ 44597077 (+) True G1935034
TU2213717 lncRNA upstream 11393 44586431 ~ 44586726 (+) True G1935052
TU2213713 lncRNA upstream 12243 44584425 ~ 44585876 (+) True G1935051
TU2213715 lncRNA upstream 13051 44584135 ~ 44585068 (+) False G1935051
TU2213728 lncRNA downstream 19038 44620958 ~ 44621391 (+) True G1935062
TU2213740 lncRNA downstream 34676 44636596 ~ 44637635 (+) True G1935072
TU2213742 lncRNA downstream 37978 44639898 ~ 44640849 (+) True G1935074
TU2213752 lncRNA downstream 53913 44655833 ~ 44656425 (+) True G1935081
TU2213778 lncRNA downstream 85515 44687435 ~ 44693479 (+) False G1935099
XM_036961767.1 mRNA upstream 1106217 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1132874 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1132876 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 1162767 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1439553 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 2063136 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 2063136 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 2097129 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 498382 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 500204 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 502212 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 686590 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 883423 45485343 ~ 45488875 (+) False G1936028

Expression Profile