RNA id: TU2213777


Basic Information

Item Value
RNA id TU2213777
length 512
lncRNA type intronic
GC content 0.38
exon number 3
gene id G1935099
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44687435 ~ 44696088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggtttatgttgtgttaactagtccttaccaaacacggtgaggtttatattgtgttatctagttcttaccaaacacggtgaggtttatattgtgttaactagtccttaccaaacacggtgaggtttatgttgtgttaactagtccttaccaaacacggtgaggtttatgttgtgttaactagtccttaccaaacacggtgaggtttatattgtgttaactagtccttaccaaacacggtgaggtttatattgtgtcaactagtccttaccaaacacggtgaggtttatattgtgttaactagtccttaccaaacacggtgaggtttatattgtgtttactaGTCCttccttaccaaacacggtgaggtttatgttgtgttaactagttcttaccaaacacggtgaggtttatattgtgtcaactagtccttaccaaacacagtgaggtttatgttgtgtcaactagtccttaccaaacacggtgaggtttatattgtgtttactaGTCCtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213752 lncRNA upstream 35816 44655833 ~ 44656425 (+) True G1935081
TU2213742 lncRNA upstream 51392 44639898 ~ 44640849 (+) True G1935074
TU2213740 lncRNA upstream 54606 44636596 ~ 44637635 (+) True G1935072
TU2213728 lncRNA upstream 70850 44620958 ~ 44621391 (+) True G1935062
TU2213689 lncRNA upstream 88950 44598119 ~ 44603291 (+) True G1935033
TU2213845 lncRNA downstream 120074 44816162 ~ 44816500 (+) True G1935158
TU2213924 lncRNA downstream 250241 44946329 ~ 44947185 (+) True G1935219
TU2213925 lncRNA downstream 252362 44948450 ~ 44949088 (+) True G1935220
TU2213936 lncRNA downstream 283961 44980049 ~ 44980270 (+) True G1935231
TU2213938 lncRNA downstream 290958 44987046 ~ 44987248 (+) True G1935233
XM_036961767.1 mRNA upstream 1200339 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1226996 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1226998 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 1256889 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1533675 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 2157258 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 2157258 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 2191251 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 404214 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 406036 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 408044 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 592422 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 789255 45485343 ~ 45488875 (+) False G1936028

Expression Profile