RNA id: TU2214299



Basic Information


Item Value
RNA id TU2214299
length 202
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1935523
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44712465 ~ 44712703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACATGGttgttctatactaagtctactaatgataatgacatggtggttctatactaaccctactaatgataatgacatggtggttctatactaagtctactaatgataatgacatggtggttctatactaagtctactaatgataatgacatggtggttctatactaagtctactaatgatactgacatggtggttctatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2214298 lncRNA downstream 65 44711753 ~ 44712400 (-) True G1935522
TU2214297 lncRNA downstream 7951 44704034 ~ 44704514 (-) True G1935521
TU2214289 lncRNA downstream 16308 44687481 ~ 44696157 (-) False G1935518
TU2214293 lncRNA downstream 16308 44689928 ~ 44696157 (-) True G1935518
TU2214292 lncRNA downstream 20013 44689928 ~ 44692452 (-) False G1935518
TU2214358 lncRNA upstream 72037 44784740 ~ 44785814 (-) True G1935560
TU2214313 lncRNA upstream 88702 44801405 ~ 44814304 (-) True G1935532
TU2214396 lncRNA upstream 146536 44859239 ~ 44860281 (-) True G1935587
TU2214437 lncRNA upstream 235590 44948293 ~ 44948535 (-) True G1935619
TU2214438 lncRNA upstream 236074 44948777 ~ 44949155 (-) True G1935620
XM_036961061.1 mRNA downstream 116821 44593457 ~ 44595644 (-) True LOC118943991
LOC118944048 mRNA downstream 1057758 43652793 ~ 43654707 (-) True LOC118944048
XM_036961572.1 mRNA downstream 1062156 43649406 ~ 43650309 (-) True LOC118944047
XM_036961571.1 mRNA downstream 1207815 43502301 ~ 43504650 (-) True LOC118944046
XM_036962032.1 mRNA downstream 1273186 43434126 ~ 43439279 (-) True LOC110503290
XM_036961713.1 mRNA upstream 588611 45301314 ~ 45370352 (-) False LOC110503298
XR_005039359.1 mRNA upstream 588611 45301314 ~ 45370352 (-) False LOC110503298
XR_005039362.1 mRNA upstream 621418 45334121 ~ 45336972 (-) False LOC118944063
XR_005039364.1 mRNA upstream 621418 45334121 ~ 45336972 (-) False LOC118944063
XR_005039360.1 mRNA upstream 621419 45334122 ~ 45336972 (-) False LOC118944063
TU2214215 other downstream 127073 44579022 ~ 44585392 (-) False G1935467
TU2214166 other downstream 191026 44521155 ~ 44521439 (-) True G1935421
TU2214020 other downstream 453804 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 1512650 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1558498 43119965 ~ 43153967 (-) True G1934061
TU2214897 other upstream 683329 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 683329 45396032 ~ 45397761 (-) True G1935978

Expression Profile