RNA id: TU2214465


Basic Information

Item Value
RNA id TU2214465
length 3397
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1935640
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44996958 ~ 45033130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctatctgaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactattaCTGAcaaggagctctataagacactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctatataagaaactaaactattactgaccaggacctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagcactataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaagctaaactattactgtccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctatataagaaactaaactattactgaccaggacctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataggaaactaaactattactgtccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctatctgaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccagcagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctccataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctccataagaaactaaactattactgaccaggagctctataagaaactaaactattactaaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctctataagaaactaaactattactgaccaggacctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataggaaactaaactattactgtccaggagctctatcagaaactaaactattactgaccaggagctctatacgaaactaaactattactgaccaggagctctatcagaaactaaactattactgaccagggagctctataagaaactaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctatctgaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactatccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactactactgaccaggagctctataagacactaaactattactgaccgggagctctataagaaactaaactattactgaccaggagctctataagacactaaactattactgaccaggagctctataagaaactaaactattactgaccaggatctctataagacactaaactattactgaccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaactgttactgaccaggagctctataaggaactaaactattactgaccaggagctctataagaagctaaactattactgaccaggagctctataagacactaaactattactgaccaggagctatataagaaactaaactattactgaccaggacctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaagctaaactattactgaccaggagctctataagacactaaactattactgaccaggagctatataagaaactaaactattactgaccaggacctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataggaaactaaactattactgtccaggagctctatcagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagcactataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaaatattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgaccaggagctctataagaaactaaactattactgtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214475 lncRNA downstream 2834 44990612 ~ 45007647 (-) True G1935646
TU2214457 lncRNA downstream 23924 44986348 ~ 44986557 (-) True G1935638
TU2214451 lncRNA downstream 44240 44965877 ~ 44966241 (-) True G1935632
TU2214444 lncRNA downstream 51651 44958473 ~ 44958830 (-) True G1935625
TU2214438 lncRNA downstream 61326 44948777 ~ 44949155 (-) True G1935620
TU2214470 lncRNA upstream 1969 45017595 ~ 45032201 (-) False G1935643
TU2214471 lncRNA upstream 6840 45022466 ~ 45032201 (-) True G1935643
TU2214496 lncRNA upstream 29217 45044843 ~ 45052303 (-) False G1935662
TU2214497 lncRNA upstream 29217 45044843 ~ 45053328 (-) False G1935662
TU2214498 lncRNA upstream 29217 45044843 ~ 45045175 (-) True G1935662
XM_036961057.1 mRNA downstream 112049 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA downstream 112049 44362159 ~ 44898432 (-) False LOC118943990
XM_036961059.1 mRNA downstream 112049 44602629 ~ 44898432 (-) True LOC118943990
XM_036961061.1 mRNA downstream 414837 44593457 ~ 44595644 (-) True LOC118943991
LOC118944048 mRNA downstream 1355774 43652793 ~ 43654707 (-) True LOC118944048
XM_036961713.1 mRNA upstream 285688 45301314 ~ 45370352 (-) False LOC110503298
XR_005039359.1 mRNA upstream 285688 45301314 ~ 45370352 (-) False LOC110503298
XR_005039362.1 mRNA upstream 318495 45334121 ~ 45336972 (-) False LOC118944063
XR_005039364.1 mRNA upstream 318495 45334121 ~ 45336972 (-) False LOC118944063
XR_005039360.1 mRNA upstream 318496 45334122 ~ 45336972 (-) False LOC118944063
TU2214215 other downstream 425089 44579022 ~ 44585392 (-) False G1935467
TU2214166 other downstream 489042 44521155 ~ 44521439 (-) True G1935421
TU2214020 other downstream 751820 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 1810666 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1856514 43119965 ~ 43153967 (-) True G1934061
TU2214897 other upstream 380406 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 380406 45396032 ~ 45397761 (-) True G1935978

Expression Profile