RNA id: TU2214496


Basic Information

Item Value
RNA id TU2214496
length 442
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G1935662
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45044843 ~ 45053328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatatgtgactgtaggtggaggtagagaggtatgtgactgtaggtggaggtatgtgactgtaggtggaggtatagaggtatgggactgtaggtggaggtatagaggtatgggactgtaggtggaggtaaagaggtatgggactgtaggtggaggtatagaggtatgggactgtaggtggaggtatagaggtatgggactgtaggtggaggtatagaggtatgggactgtaggtggaggtaaagaggtatgggactgtaggtggaggtaaagaggtatgggactgtaggtgggggTATAGAGGTATgagactgtaggtggaggtaaagaggtatgtgactgtaggtggggGTATAGAGGTATgagactgtaggtggaggtaaagaggtatgtgactgtaggtgggggTATAGAGGTATgagactgtaggtggaggtaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214461 lncRNA downstream 2491 44993478 ~ 45042352 (-) True G1935639
TU2214478 lncRNA downstream 7520 44999877 ~ 45037323 (-) True G1935648
TU2214466 lncRNA downstream 11713 44996958 ~ 45033130 (-) False G1935640
TU2214470 lncRNA downstream 12642 45017595 ~ 45032201 (-) False G1935643
TU2214471 lncRNA downstream 12642 45022466 ~ 45032201 (-) True G1935643
TU2214518 lncRNA upstream 14151 45066454 ~ 45066753 (-) True G1935671
TU2214519 lncRNA upstream 14526 45066829 ~ 45067144 (-) True G1935672
TU2214521 lncRNA upstream 21305 45073608 ~ 45073922 (-) True G1935674
TU2214634 lncRNA upstream 72731 45125034 ~ 45125514 (-) True G1935758
TU2214680 lncRNA upstream 150731 45203034 ~ 45203382 (-) True G1935799
XM_036961057.1 mRNA downstream 146411 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA downstream 146411 44362159 ~ 44898432 (-) False LOC118943990
XM_036961059.1 mRNA downstream 146411 44602629 ~ 44898432 (-) True LOC118943990
XM_036961061.1 mRNA downstream 449199 44593457 ~ 44595644 (-) True LOC118943991
LOC118944048 mRNA downstream 1390136 43652793 ~ 43654707 (-) True LOC118944048
XM_036961713.1 mRNA upstream 249011 45301314 ~ 45370352 (-) False LOC110503298
XR_005039359.1 mRNA upstream 249011 45301314 ~ 45370352 (-) False LOC110503298
XR_005039362.1 mRNA upstream 281818 45334121 ~ 45336972 (-) False LOC118944063
XR_005039364.1 mRNA upstream 281818 45334121 ~ 45336972 (-) False LOC118944063
XR_005039360.1 mRNA upstream 281819 45334122 ~ 45336972 (-) False LOC118944063
TU2214215 other downstream 459451 44579022 ~ 44585392 (-) False G1935467
TU2214166 other downstream 523404 44521155 ~ 44521439 (-) True G1935421
TU2214020 other downstream 786182 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 1845028 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1890876 43119965 ~ 43153967 (-) True G1934061
TU2214897 other upstream 343729 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 343729 45396032 ~ 45397761 (-) True G1935978

Expression Profile