RNA id: TU2213991


Basic Information

Item Value
RNA id TU2213991
length 218
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1935266
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45046126 ~ 45049464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataccgtatacaaaaaaggtggtagtcagtcggtcagtcagacaatccgccaatagatctccagcggagaaaggccacgaagaatggagaggtgtagtccacggacgcaaagagtggatccgatcctgggtaaactctctcaggctacaaaacacacgtttaacagcaacaaaacaaccggaatagagaagctccgggaacacatcctcagtcacgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213985 lncRNA upstream 3294 45042484 ~ 45042832 (+) True G1935261
TU2213953 lncRNA upstream 4258 44994278 ~ 45041868 (+) False G1935238
TU2213988 lncRNA downstream 2588 45052052 ~ 45054241 (+) True G1935264
TU2214522 lncRNA downstream 25161 45074625 ~ 45075553 (+) True G1935675
TU2214542 lncRNA downstream 44056 45093520 ~ 45093723 (+) True G1935690
TU2214556 lncRNA downstream 57564 45107028 ~ 45107303 (+) True G1935702
TU2214568 lncRNA downstream 72741 45122205 ~ 45123044 (+) True G1935711
XM_036961767.1 mRNA upstream 1554224 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1580881 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1580883 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 1610774 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1887560 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 2511143 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 2511143 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 2545136 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 50838 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 52660 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 54668 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 239046 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 435879 45485343 ~ 45488875 (+) False G1936028

Expression Profile