RNA id: TU2214797


Basic Information

Item Value
RNA id TU2214797
length 1996
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G1935899
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45296610 ~ 45298983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATAAAATACATGCAAATAATATCTATAACATGATCACAGTTACTGAATATAGTCTCATTTTTGTTGTGTGCATTTCGATAATGTCTAAATACCAATCCTTTAAACGTGAGTGGTTAGTCCTGCTCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTTAGTACTACGATCCAAAGACAGTCAACAGTTAACTAGTTTGACAGTGGTTAGTACTACGATCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTTAGTGCTGCTCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTTAGTACTACGATCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTTAGTGCTGCTCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTGAGTCCTGCTCCAAAGACAGTCAACAGTTAACTGTAGTCTGACAGTGGTTAGTACTACGATCCAAAGACAGTCAACAGTTAACTATAGTCACCTCGATCAgtctaaccggtgtctgtatatagcctctctactttatatagcctgtctttttactgttttatttctttacttacttgttcacctaatacattttttgcactattggttagagcctgtaagtaagaatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcggcgcatgtgacaaataaactttgatttgatttagtctgaCAATTACACAAACTAGCTATGGACAAAGTCACACTTCTGTGACAAATAAATCATTTCTGCCAACATTCTGTATATGTGCAATACAAGCACGGTAGAGTAGCGGACCACCAACGATGACAAGAAAAGTCACTTTAGTTGCattgttctgtctctctcactgtttaaCCCATCCATCCAATAGCCACCATCAGTGCTATACATGATAATCAGAGAATCAATCAACTGAATGGAAATGACTGAAAACATAATccacactcaaaatgtacatggTAACAATGTAAAACATTTGTTATGTAAAAAGTTAAATACTGCCAATTTGGCATCTTGGCTTTTTAGTGTAGCTAGCAATATATCATCAGTCGTCAAAATGTCCTTCCTCTACAGTAGACAGGCTGATAGATCATTAAAGGAACTGAGCGATGTTATGAGTGAATAAtgtgttagggctctattcagtctgGATAATGTGTTAGGGCTCTGTTCAGTCTTGATAATGTGTtcgggctctattcaatctggataatgtgttagggctctattcagtctgGATAATGTGTTAGGGCTCTGTTCAGTCTTGATAAtgtgttagggctctattcagtctgGATAATGTGTTAGGGCTCTGTTCAGTCTTGATAATGTGTtcgggctctattcaatctggatAATGTGTTAGGACTCTTCAGCCTGGATAATGTGTAGGGTTCTAATCAGTCTGGATAAtgtgttagggctctattcagtctggataatgtgttagggctctattcagtctgGATAATGTGTTAAGGCTCTGCTCAGTCTGGATAAtgtgttagggctctattcagtctgtatAATGTGTTAAGGCTCTGCTCAGTCTGGATAAtgtgttagggctctattcagtctggataatgtgttagggctctattcagtctggataatgtgttagggctctattcagtctggataatgtgttagggctctattcaatctggatCGCTGAAGTGTTACACATACCGcactagaaatgtaaaggtaatttcctatTGAGCCGACATTTGCAGCTTTTACCGTCaatgcagtctctgctaacgcgaaggcattgccttcaaatttcaatcacgctgtgaTGCTCAATTaccgcgatacggattgaatagagccctaagtgTCATCAACATTTAAACATCTGAGAAAGCAGCGATTCTGATCATAAAGGAAGAAATATAGCAATAACATAATGTTGCTGTAGTGTTCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214793 lncRNA upstream 8686 45287593 ~ 45287924 (+) True G1935896
TU2214790 lncRNA upstream 11029 45285360 ~ 45285581 (+) True G1935893
TU2214786 lncRNA upstream 13605 45282773 ~ 45283005 (+) True G1935889
TU2214771 lncRNA upstream 23817 45271277 ~ 45272793 (+) False G1935875
TU2214889 lncRNA downstream 88189 45387172 ~ 45387385 (+) True G1935971
TU2214896 lncRNA downstream 96979 45395962 ~ 45397684 (+) True G1935977
TU2214899 lncRNA downstream 101262 45400245 ~ 45400652 (+) True G1935979
TU2214933 lncRNA downstream 140814 45439797 ~ 45443315 (+) True G1936005
TU2214958 lncRNA downstream 186360 45485343 ~ 45492999 (+) False G1936028
XM_036961767.1 mRNA upstream 1804708 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1831365 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1831367 43440035 ~ 43465243 (+) False ddx6
TU2214794 other upstream 7475 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 192110 45104132 ~ 45104500 (+) True G1935696
TU2214548 other upstream 192652 45100302 ~ 45103958 (+) False G1935694
TU2214547 other upstream 192652 45102124 ~ 45103958 (+) True G1935694
TU2212654 other upstream 1861258 43433448 ~ 43435352 (+) True G1934201
TU2214960 other downstream 186360 45485343 ~ 45488875 (+) False G1936028
TU2214961 other downstream 186360 45485343 ~ 45487447 (+) False G1936028
TU2214964 other downstream 186753 45485736 ~ 45487871 (+) True G1936029
TU2215206 other downstream 466867 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 545721 45844704 ~ 45846538 (+) True G1936286

Expression Profile