RNA id: TU2215043


Basic Information

Item Value
RNA id TU2215043
length 260
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1936105
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45529308 ~ 45529593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaattagagagagcatacttaaattcacacaggacaccggataggacaggagaagtactccagatataacaaactactgcagcataaatactggaggctgagacaggaggggtcgggagacactgtggccccatccgaggacacccccgtacaggaaggatataaccacacccactttgccaaagcacagcccacacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggccgagtatagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215025 lncRNA downstream 14765 45513941 ~ 45514543 (-) True G1936087
TU2214909 lncRNA downstream 125252 45403811 ~ 45404056 (-) True G1935986
TU2214892 lncRNA downstream 137807 45391269 ~ 45391501 (-) True G1935974
TU2214856 lncRNA downstream 153585 45327751 ~ 45375723 (-) True G1935945
TU2214843 lncRNA downstream 226628 45301358 ~ 45302680 (-) True LOC110503298
TU2215294 lncRNA upstream 32293 45561886 ~ 45562126 (-) True G1936311
TU2215314 lncRNA upstream 61387 45590980 ~ 45591186 (-) True G1936331
TU2215315 lncRNA upstream 62559 45592152 ~ 45592412 (-) True G1936332
TU2215319 lncRNA upstream 77050 45606643 ~ 45607077 (-) True G1936336
TU2215320 lncRNA upstream 79408 45609001 ~ 45609232 (-) True G1936337
XM_036961713.1 mRNA downstream 158956 45301314 ~ 45370352 (-) False LOC110503298
XR_005039359.1 mRNA downstream 158956 45301314 ~ 45370352 (-) False LOC110503298
XR_005039362.1 mRNA downstream 192336 45334121 ~ 45336972 (-) False LOC118944063
XR_005039364.1 mRNA downstream 192336 45334121 ~ 45336972 (-) False LOC118944063
XR_005039360.1 mRNA downstream 192336 45334122 ~ 45336972 (-) False LOC118944063
XM_036961468.1 mRNA upstream 41485 45571078 ~ 45883165 (-) True LOC110503441
TU2214897 other downstream 131547 45396032 ~ 45397761 (-) False G1935978
TU2214898 other downstream 131547 45396032 ~ 45397761 (-) True G1935978
TU2214215 other downstream 943916 44579022 ~ 44585392 (-) False G1935467
TU2214166 other downstream 1007869 44521155 ~ 44521439 (-) True G1935421
TU2214020 other downstream 1270647 44257296 ~ 44258661 (-) True G1935283

Expression Profile