RNA id: TU2215073


Basic Information

Item Value
RNA id TU2215073
length 257
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1936127
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45549803 ~ 45550059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaaaagctctgtgacacggcagggtcgactcattcagactgctcttactccctaatttttcagaatacaagcctgaaacaatttccaaagactgttgacatctagtggaagccataggaactggaatttgagtcctaagtcaatggatactgtaatggcattgaatagaaaaccaccaaaaaaaaaaaacctacttcctgaatggatttttctgaagttttcgcctgctaaatcagttctgttatactcaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215036 lncRNA upstream 26849 45522664 ~ 45522954 (+) True G1936098
TU2215028 lncRNA upstream 32582 45517013 ~ 45517221 (+) True G1936090
TU2215027 lncRNA upstream 32892 45516675 ~ 45516911 (+) True G1936089
TU2215024 lncRNA upstream 35260 45513941 ~ 45514543 (+) True G1936086
TU2215011 lncRNA upstream 46796 45502775 ~ 45503007 (+) True G1936075
TU2215081 lncRNA downstream 7196 45557255 ~ 45557564 (+) True G1936135
TU2215091 lncRNA downstream 19313 45569372 ~ 45584931 (+) True G1936145
TU2215106 lncRNA downstream 43859 45593918 ~ 45594415 (+) True G1936160
TU2215107 lncRNA downstream 44611 45594670 ~ 45595093 (+) True G1936161
TU2215108 lncRNA downstream 45063 45595122 ~ 45595339 (+) True G1936162
XM_036961767.1 mRNA upstream 2057901 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2084558 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2084560 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 60928 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 61932 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 62356 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 260668 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 445303 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 215791 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 294645 45844704 ~ 45846538 (+) True G1936286

Expression Profile