RNA id: TU2215106


Basic Information

Item Value
RNA id TU2215106
length 498
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G1936160
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45593918 ~ 45594415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAACCTTCCCAACACCTGCAAAGCCATCCTTAGATGTGTGAGTGCAAGAACTCACCTCCCTCTGCAGAGTACACAGTGACCACACCACTGAAGGGTCCGTCTCCCTTGTTGTTGTACACGCCCACTTTCACTTCGAAGGGGGTGAGGGGAGGGAAGGTCTCGTCTCTGTACTTGTATGTAGTGGAATCTGCTGATGTCACCATCTTCTCCTTCCAGCCTCGCGTACCATTGGCTCGGAATGCCACGATGTAGCCAAAGCCCTTGCCATTCTGGAACTCCTCAGACACAGGCTGGAAAACAAGGAAAGAGATTCAGTTTTATTTGATTGGATATAAAACCCAAATCAATGACCACAACATTGGTCATTTAAATATCTGAATACATTAATTTACATTCATAAATGAATTAATCTGTTCAAAAATCAGCCCAGCCTGCTGTAGATATTAATAATTGTATTGTATTCAAGAAGGATCCTTACAGGAGCCAATCTCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215091 lncRNA upstream 8987 45569372 ~ 45584931 (+) True G1936145
TU2215081 lncRNA upstream 36354 45557255 ~ 45557564 (+) True G1936135
TU2215073 lncRNA upstream 43859 45549803 ~ 45550059 (+) True G1936127
TU2215036 lncRNA upstream 70964 45522664 ~ 45522954 (+) True G1936098
TU2215028 lncRNA upstream 76697 45517013 ~ 45517221 (+) True G1936090
TU2215107 lncRNA downstream 255 45594670 ~ 45595093 (+) True G1936161
TU2215108 lncRNA downstream 707 45595122 ~ 45595339 (+) True G1936162
TU2215110 lncRNA downstream 2161 45596576 ~ 45596783 (+) True G1936164
TU2215113 lncRNA downstream 12459 45606874 ~ 45607105 (+) True G1936167
TU2215148 lncRNA downstream 69923 45664338 ~ 45690334 (+) True G1936202
XM_036961767.1 mRNA upstream 2102016 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2128673 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2128675 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 105043 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 106047 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 106471 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 304783 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 489418 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 171435 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 250289 45844704 ~ 45846538 (+) True G1936286

Expression Profile