RNA id: TU2215113


Basic Information

Item Value
RNA id TU2215113
length 232
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1936167
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45606874 ~ 45607105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttagtgtcctgatgtcattgtttctgtgttaggatacacaagtataggctgtttcggttttcgtttaagtttattgttttggtagtgtttgtgtttagtgtgtttcttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaaaccgtgacagaatcacccaccacaaaaggaccaagcagcgtgtcaacaggcaggagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215110 lncRNA upstream 10091 45596576 ~ 45596783 (+) True G1936164
TU2215108 lncRNA upstream 11535 45595122 ~ 45595339 (+) True G1936162
TU2215107 lncRNA upstream 11781 45594670 ~ 45595093 (+) True G1936161
TU2215106 lncRNA upstream 12459 45593918 ~ 45594415 (+) True G1936160
TU2215091 lncRNA upstream 21943 45569372 ~ 45584931 (+) True G1936145
TU2215148 lncRNA downstream 57233 45664338 ~ 45690334 (+) True G1936202
TU2215155 lncRNA downstream 72534 45679639 ~ 45679934 (+) True G1936209
TU2215168 lncRNA downstream 98472 45705577 ~ 45706338 (+) True G1936222
TU2215173 lncRNA downstream 105539 45712644 ~ 45712982 (+) True G1936226
TU2215174 lncRNA downstream 106717 45713822 ~ 45714563 (+) False G1936227
XM_036961767.1 mRNA upstream 2114972 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2141629 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2141631 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 117999 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 119003 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 119427 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 317739 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 502374 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 158745 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 237599 45844704 ~ 45846538 (+) True G1936286

Expression Profile