RNA id: TU2215174


Basic Information

Item Value
RNA id TU2215174
length 698
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1936227
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45713822 ~ 45714563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAATTACTGCTGCTGTTTCCCCAGGGAATCCTTATGACAAATCAGATGACTCAAATGTTTTCCAAGCCAACTGATCAAATCATGGACTTAATTGAGTTGACATTTGAAaaatgtgtctcaaatggcaccctattccctttatagggcactacttgtGGCACTATATAGgagaccctattccctttttatagggcactacttgtggcactatataggaaaccctattccctttatagggcactactttaggcACTATATAGgagaccctattcccttcatagggcactactttaggcACTATATAGgagaccctattcCcttcatagggcactactttaggcACTATATAGgagaccctattcccttcatagggcactactttaggcactatataggaaaccctattcccttcatagggcactactttaggcACTAAATAGgaaaccctattcccttcatagggcactactttaggcactatataggaaaccctattcccttcatagggcactactttaggcactatataggaaaccctattcccttcatagggcactactttaggcACTATACAGgataccctattcccttcatagggcactactttaggcACTATATAGGAGATAGGATGCCATCATTGCGTGCAACGTGTGCCATAAGCGAGGGAACATGTGGAAGGTCACGCAGATGACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215173 lncRNA upstream 840 45712644 ~ 45712982 (+) True G1936226
TU2215168 lncRNA upstream 7484 45705577 ~ 45706338 (+) True G1936222
TU2215148 lncRNA upstream 23488 45664338 ~ 45690334 (+) True G1936202
TU2215155 lncRNA upstream 33888 45679639 ~ 45679934 (+) True G1936209
TU2215113 lncRNA upstream 106717 45606874 ~ 45607105 (+) True G1936167
TU2215188 lncRNA downstream 12132 45726695 ~ 45732151 (+) True G1936233
TU2215209 lncRNA downstream 53580 45768143 ~ 45768528 (+) True G1936248
TU2215210 lncRNA downstream 54068 45768631 ~ 45769089 (+) True G1936249
TU2215212 lncRNA downstream 56944 45771507 ~ 45771807 (+) True G1936251
TU2215213 lncRNA downstream 57950 45772513 ~ 45772859 (+) True G1936252
XM_036961767.1 mRNA upstream 2221920 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2248577 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2248579 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 224947 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 225951 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 226375 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 424687 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 609322 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 51287 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 130141 45844704 ~ 45846538 (+) True G1936286

Expression Profile