RNA id: TU2215206


Basic Information

Item Value
RNA id TU2215206
length 1058
RNA type TUCP
GC content 0.33
exon number 2
gene id G1936247
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45765850 ~ 45767859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttctcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttttttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaagtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215188 lncRNA upstream 33699 45726695 ~ 45732151 (+) True G1936233
TU2215174 lncRNA upstream 51287 45713822 ~ 45714563 (+) False G1936227
TU2215176 lncRNA upstream 51287 45713822 ~ 45714563 (+) True G1936227
TU2215173 lncRNA upstream 52868 45712644 ~ 45712982 (+) True G1936226
TU2215168 lncRNA upstream 59512 45705577 ~ 45706338 (+) True G1936222
TU2215209 lncRNA downstream 284 45768143 ~ 45768528 (+) True G1936248
TU2215210 lncRNA downstream 772 45768631 ~ 45769089 (+) True G1936249
TU2215212 lncRNA downstream 3648 45771507 ~ 45771807 (+) True G1936251
TU2215213 lncRNA downstream 4654 45772513 ~ 45772859 (+) True G1936252
TU2215214 lncRNA downstream 6761 45774620 ~ 45774850 (+) True G1936253
XM_036961767.1 mRNA upstream 2273948 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2300605 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2300607 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 276975 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 277979 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 278403 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 476715 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 661350 45104132 ~ 45104500 (+) True G1935696
TU2215260 other downstream 76845 45844704 ~ 45846538 (+) True G1936286

Expression Profile