Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053683 |
| length | 1479 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 10 |
| gene id | XLOC_027263 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 17327704 ~ 17377658 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0031080 | nuclear pore outer ring | cellular_component |
| id | description |
|---|---|
| ko03013 | Nucleocytoplasmic transport |
| ko05014 | Amyotrophic lateral sclerosis |
| ko03019 | Messenger RNA biogenesis |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040718-363 | Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NUP37 (nucleoporin 37). |
| ensembl_id | ENSDART00000133160 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053680 | lncRNA | upstream | 32091 | 17292768 ~ 17295613 (+) | True | XLOC_027261 |
| TCONS_00053679 | lncRNA | upstream | 40052 | 17286658 ~ 17287652 (+) | False | XLOC_027261 |
| TCONS_00053670 | lncRNA | upstream | 80471 | 17245001 ~ 17247233 (+) | False | XLOC_027260 |
| TCONS_00057708 | lncRNA | downstream | 88654 | 17459071 ~ 17459648 (+) | True | XLOC_027267 |
| TCONS_00057709 | lncRNA | downstream | 262235 | 17632652 ~ 17636109 (+) | True | XLOC_027269 |
| TCONS_00057710 | lncRNA | downstream | 421200 | 17791617 ~ 17823782 (+) | False | XLOC_027273 |
| TCONS_00053702 | lncRNA | downstream | 422596 | 17793013 ~ 17823782 (+) | False | XLOC_027273 |
| TCONS_00057711 | lncRNA | downstream | 434515 | 17804932 ~ 17823782 (+) | False | XLOC_027273 |
| TCONS_00053681 | mRNA | upstream | 987 | 17310143 ~ 17326717 (+) | True | XLOC_027262 |
| TCONS_00053676 | mRNA | upstream | 30284 | 17279966 ~ 17297420 (+) | False | XLOC_027261 |
| TCONS_00053678 | mRNA | upstream | 36644 | 17280868 ~ 17291060 (+) | False | XLOC_027261 |
| TCONS_00053677 | mRNA | upstream | 38684 | 17280028 ~ 17289020 (+) | False | XLOC_027261 |
| TCONS_00053674 | mRNA | upstream | 75946 | 17245217 ~ 17251758 (+) | True | XLOC_027260 |
| TCONS_00053690 | mRNA | downstream | 46694 | 17417111 ~ 17419193 (+) | True | XLOC_027265 |
| TCONS_00053692 | mRNA | downstream | 54438 | 17424855 ~ 17536242 (+) | False | XLOC_027266 |
| TCONS_00053691 | mRNA | downstream | 54438 | 17424855 ~ 17536242 (+) | False | XLOC_027266 |
| TCONS_00053693 | mRNA | downstream | 153913 | 17524330 ~ 17537618 (+) | False | XLOC_027266 |
| TCONS_00053694 | mRNA | downstream | 153913 | 17524330 ~ 17538270 (+) | True | XLOC_027266 |
| TCONS_00053669 | other | upstream | 265607 | 17061980 ~ 17062097 (+) | True | XLOC_027258 |
| TCONS_00053668 | other | upstream | 423235 | 16898641 ~ 16904469 (+) | True | XLOC_027255 |
| TCONS_00053652 | other | upstream | 1262968 | 16060556 ~ 16064736 (+) | False | XLOC_027237 |
| TCONS_00053651 | other | upstream | 1271927 | 16051600 ~ 16055777 (+) | False | XLOC_027237 |
| TCONS_00053646 | other | upstream | 1336614 | 15988387 ~ 15991090 (+) | True | XLOC_027234 |
| TCONS_00053689 | other | downstream | 269 | 17370686 ~ 17376220 (+) | True | XLOC_027263 |
| TCONS_00053700 | other | downstream | 301214 | 17671631 ~ 17689325 (+) | False | XLOC_027272 |
| TCONS_00053701 | other | downstream | 321753 | 17692170 ~ 17694404 (+) | True | XLOC_027272 |
| TCONS_00053705 | other | downstream | 482042 | 17852459 ~ 17854415 (+) | True | XLOC_027274 |
| TCONS_00053726 | other | downstream | 1546551 | 18916968 ~ 18917082 (+) | True | XLOC_027289 |
