RNA id: LOC110504208


Basic Information

Item Value
RNA id LOC110504208
length 3644
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC110504208
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22355974 ~ 22365214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTTGACTGGTTTGTCACAAAGTGCAAATTTTGCCGAACCTAGTTGGAGCGCACGCCCTCACTTATTGTTGTGATTATTTTCTAGCctcaaatgttagctagctatcgttGCTCACTGGGAACAACACATTTAAGACATAATTTTTGTATCTAAACTAATTGCTATACTTTCGAAAATTAATAAGACAGCCGCTTAATTTAAAGGATATcctatctcttcattcaaaggtACAATAGGATGACACGGGTGCTAACTGCAGCCCCAGAAAGATGACCGGCACCACCCTAGGGCATGGTCAGGATGGGACCAGATGTGCCCTTGCTCAATGAATACAAGCAGGAGTTCTGGAAGCGTTTCCCTCAGATGGTGCTGGGGGGTCCGTGCTTGAAGTTGGGCTACTGCACCCCGCCTTATATCTATGTCAACCAGGCGGTCTTGTTCTTGACACCATGGCTGTTGggtagcattgtcatgctgctGTGCCAGCTGCAGGAGGAGCTCCATGCTGCCGTGCTGTCTGCTATGCTCATGCTTGGGGCAGCAGTGGGTGTCCAGGCCCTGGCACTGTATGCAGCCCGCAGGAATGGCACGGTGGAGAGGTTGGGAGTGCCCAACCCTGTGTGCTCTTCCCTGGGGCtgatgaggaggaggtgtagttCACCAACTGTGTAGGCCCAGAGACAGTGAGGTTCATCGCCCCAGGGAAGAGGTTTGGGCTGAACGTGGTGCTCCACACCATGCTGGCGAGGACCCTCTGTGGCCTGGGAACATGGTATGTGCTCCTGGGTAGGTTAACTACACTCTACGGCAGTGTGGGTGTAGCCTTTGTGGTCTTTGTCCTGAGCTGGGTGACTGTACGGCAGAGTACTCCCTTATCATCAACACGGCCGCAGAGATGGCCACATTCCAGGCACAGGACACCTATGAGATCATCCCACTCATCCGACCACTCTACATATTAACTTTCATAGCTGTGGACCTTGCTGATAGATTTACAGATCCAGTACCAGAGTTCCAGCTAACCAGTCAGGTTCTTCATGTGGTGTTCCTGGTCCGGCCTCTGCTGTTGGCGCTGGGCATGCTGTCACCTCTGGACGCCCTCCTCCTTTGGGGCATGGAGCAGGCACTGGTGTTCGGTTTGGGCTGCTCTCCCATGTCCAGTAACCTTAGGTTGCTGGGGATGTTCGCCATATCTGCATATGTCACTGTTTGTACCTTCTTCATCCCGTCCACCGTGGGTGTGGTCGTCTTCTCCATGGCCATGGGGTTTCTGCTTAGTTTAGATCTCAGACAATTTGGGGCACATTGTAGAGGAGGGCCCAGGGTGACCCGTGGTGACAGTGGATGGCGTAGGGGGGCATCCTCTGCCACTCCCCGCTGGTTTGGCTGGCAGTTGTGCTGCAGGGAGATGCTGCTCTACCTGGGGCTACTGCTGGGGGCCATGGCTGAGGCAGGCCTCTTACATCACTTCCTCAGTCCCTCTCAGCCCCAGAACCTGGCCAGGGGACCTCAAGctacctcctcatcctcttcattTTCTGCTGGGCTCTCGGAGAGATCCAGGGAGCCTATGTTTTTGGAGGAGTATTCCTCAACCCACTGTACCCAAGAGGAATGGCCAATGTCCGGGTGTTCAAGCAGCGCAGAAGGGGTCTCCCCGTGGCTGGGGCCATCAGGAGGGTGCTGCTCAATCTGATGTCTCCCTTTGCAATGATTGCTTTGCTGATGCTGGATGGCTCTGTTCAGCAACTCCACACAGCCTCTCTCAGTGTGGGATTCACCCGGGCCTTCAGGATGGTGTGGCAGAGCTTTGAGGATGCCCTGTTTCAGATGGTGGTGTCAGTGAGGCTGGCTACAGGGGAAACCAGACTGCCTGGGTGGGACAGTATGGGCATAGGGGTCCAGCTCCTTCTGGTGGGCCTGCTGAGTGATAGGCTGCTCCAGTTCCTGTCCAAGCTGAAGTTTGCCCTGACCCTGCTGGTGACCTCCTGGACTGAGAAGAAATAGCGGCTTCAGTCGGCCGGGACCCTCCTGGCCCTGAACGCTTCCCTGTGtcctctgctgctctctgtggTGTTCCTGTTTGCCATGATCTCTGCTCCTCTGCTGCCCCTCTTCACCCTGCCCATCTTCCTTTGGGCTTCCCTCAGCGTAGTTGGGTTGGGCCCGTGGGCACCGCCTGCCTCTGTCCAGACTCCATCTACTACCAGCAGATGAATGGGAGCCTGGTCTTTGCTTTGAGGAGTACCTTCACCAGGGGATCACTTCGTTTGTTCTCTGGCTCCTGGCTTCCAGTTCCTGGGTTGCTTCCAGGACACCGCATGGTTTGGATCATGATCTTGGAGAGAGGATATGGCTACTGCACAGTCAACATCAAGGGTCTGGAGCTGCAGGACACGTCGTACCATTCAGTGGAGGCTCGGGGGGGGTTAAACCTGCACTTGGGAACTCTGTCCAGAGACATAAGACTTTTACTGGGGACACCGGGAAAGGAAAGTAAGTTCCAGCCCTCCCATCTTGGCCAGTCAACTGTCACCCAGCCTTCAGAGGCTGTTATGGTGGAGTCCGTCTCCTCTCTCAAGTTTAGACGGGACAGCTCCAGTTTGACGACCTCCGGTGACTGGTCAGATGAGGATGACCTGTGTGGGGCTCAGCCAGCCAGGAGGACGGTGGTGCTGGTAAGTACGGAGGCCCAGCTGGGGGACACAGTGCTCCACACCAGCCCCTCACTGCcaggctctgtggagatgggcagTAGGTTTGAAAACATGGCCCTCTCGTCCCTCCAGGCTCTGGGGCTCCCGGCTGTGGACAAGGGCAGGAACCCTGAAGTACCCCCGACAGAGTCCTCCGGCATCTTGGCCCATGCAAACTTTAACTGCCCCCACACTGAGCTGTTCAGTCTGCCCCCTGGGTGGAGGACATCCCCCTTATCATCCCGGTTGCAGCAGCCCTATGCTTTTGTTCCCCGAGTGGTTTCGGTTCACTCTGGGGCAGTTGGCGCTGTCCATTCAGGACAAGGCTTTGGAAGATGTGGCCAAAGccctgaaggaggatgaggagctGAGGGACCAGTCATGCCTCATCTCCCTGGGGACAGAGTCTGCCTTTACCAGCCCCAGCTATGTCTACAGGGTCTACTGTGGGGACGTGCCTTGGACAGAGGGGCTGGAGTGGCTCTCTGAAAACAAAGAACTTGACCAGCTTGCACTTAAGGCTTTCAGGTACAGTTTCAAGCTGCTGTTTGATCAGGTGAGTCTGGGGCCAATAGAGAGTCTTGAGGAGCTGTTCAGCACACTGGAGGAGTATGAGAGGGACTGGTACATCGCCCTGGTGGCTGACAGAGGCTGGCAGGACTGTGTCCTACAGGAGAAACCCTCTTCTCACCGGGCCATGACCTCACCCTGAGCACTTACACAGGGCTGGTTCAGGTAGGCCGTCCGAATGAGGTGGTGGTGCGTGGCCAGTGGGCTAACCTGTCCTGGGACCTGCTCTACGCCACCAACGATGATGAGGAGCACTACAGCAACCAggccctcctctgtccccctgcACCTCCCCTGCTTCTAACCTCAACCCCTTGTTGGGATACGCCATCTTCACTGACTTCCCTATACCCACCCTGCCTCGTGTTTGCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244459 lncRNA upstream 22315 22333234 ~ 22333659 (+) True G1962929
TU2244457 lncRNA upstream 25797 22329965 ~ 22330177 (+) True G1962927
TU2244453 lncRNA upstream 32789 22322954 ~ 22323185 (+) True G1962923
TU2244450 lncRNA upstream 34652 22320952 ~ 22321322 (+) True G1962920
TU2244449 lncRNA upstream 35075 22320441 ~ 22320899 (+) True G1962919
TU2244495 lncRNA downstream 36914 22402128 ~ 22402758 (+) False G1962956
TU2244498 lncRNA downstream 36914 22402128 ~ 22402863 (+) True G1962956
TU2244505 lncRNA downstream 44629 22409843 ~ 22410127 (+) True G1962963
TU2244507 lncRNA downstream 46093 22411307 ~ 22411510 (+) True G1962965
TU2244514 lncRNA downstream 56630 22421844 ~ 22422085 (+) True G1962972
XM_021584948.2 mRNA upstream 37965 22297012 ~ 22318009 (+) False lrrc9
LOC110504207 mRNA upstream 105982 22223114 ~ 22249992 (+) False LOC110504207
XM_021584947.2 mRNA upstream 149265 22186199 ~ 22206709 (+) True kif15
XM_021584943.2 mRNA upstream 184074 22117768 ~ 22171900 (+) True LOC110505613
XM_021584941.2 mRNA upstream 238844 22053375 ~ 22117130 (+) False zfyve28
XM_021584952.2 mRNA downstream 7743 22372957 ~ 22386710 (+) False ppm1aa
XM_021584951.2 mRNA downstream 7770 22372984 ~ 22386710 (+) True ppm1aa
XM_021584955.2 mRNA downstream 100467 22465681 ~ 22473989 (+) True six6a
XM_021584958.2 mRNA downstream 147380 22512594 ~ 22569987 (+) False mnat1
XM_021584959.2 mRNA downstream 148939 22514153 ~ 22569987 (+) True mnat1
TU2244437 other upstream 45173 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 81311 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 487941 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 511964 21792183 ~ 21844010 (+) True G1962316
TU2242869 other upstream 1287305 21067964 ~ 21068669 (+) True G1961492
TU2244488 other downstream 27377 22392591 ~ 22392956 (+) True G1962949
TU2245342 other downstream 552732 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 1240720 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1711307 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1995223 24360437 ~ 24360985 (+) True G1965262

Expression Profile