RNA id: XM_021584955.2


Basic Information

Item Value
RNA id XM_021584955.2
length 7246
RNA type mRNA
GC content 0.41
exon number 2
gene id six6a
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22465681 ~ 22473989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTTGACAGTTACTGACGGGCATCCATGGCAACCACGAAACCAATCTGCCAAGTCCAATAGAAAATCAGCAGATGGGCTGACTGTCTTTTCCCTGTTCAAAATGTATCTCGGTTTTAGTTTTTTTATACCTCTTGTACTTTCAACCTACGAAGTTCACCAGCCGATCGCTGCAGTAGCCAGTCAGAGGGCATAGTTCCTCAGTGTTTTTAACCGTTGATCTGTTCACTTTAGGATTGCCTTTTTgcctgagagagcgagagggagagaggataagcGCGAGAGGGGAgcgtgtgatagagagagacggagaggaaaCGAGAAGCCTCCATGTTTCAGCTGCCTATCTTAAATTTTAGCCCCCAGCAGGTTGCGGGGGTTTGCGAGACCCTGGAAGAGAGCGGGGACATTGAGCGCCTAGGTCGCTTCCTCTGGTCTCTGCCCGTTGCCCCGGCAGCCTGCGAAGTCCTCAACAAGAATGAGTCGGTGCTTAGGGCGCGGGCAATCGTGGCCTACCACACCGGGAATTTCCGAGAACTTTACCACATCCTGGAGAACCACAAGTTCACCAAAGAGTCTCACACTAAACTACAGGCCCTGTGGCTGGAGGCGCATTACCAAGAGGCAGAGAAGCTGCGGGGCCGCCCGCTAGGGCCTGTGGACAAATACAGGGTGCGGAAGAAGTTCCCTCTGCCCAGAACGATATGGGACGGAGAGCAAAAGACCCACTGCTTCAAGGAGAGAACCCGACATTTGCTACGCGAATGGTACTTGCAGGACCCTTACCCGAACCCGAGCAAAAAAAGGGAGCTCGCACAGGCTACTGGACTTACTCCCACACAAGTCGGAAACTGGTTCAAAAATCGTAGACAAAGGGATAGAGCGGCGGCTGCGAAAAATAGGCTACAGCAAGGGTTGTCCCAAGGCTCGGTTCGGTCTTTGGCTGATGATGATGGAACCGTCGATCGACTCGGTCCCGCCTCCAGCCCCGAGGCAAGTTTGTCGAGCAAAGCCGCCACCTCGGCTATCTCTATCACTTCCAGCGACAGCGAATGTGACATCTAATGGAGCACAAAGCAGtcgagaggaggaagaggataaaTTGACAGTATAAAAATGAAGGAGATGCTGAAAAACAATCTAACATAAAAACAGTCATAGTGCCTGCGTTTGAATTGAAAGAAACTGTTCTTCTTTGATGACTGCCAAAACACGAGGGTTCTAACGGAATGCCCTGTCTTAAAGCTATAGGctactttcatttttttttttcgtTTTCCACTATGGATGACTGAAGCTAATGCCAGCTGAAAGAAAATGTAAAGAAAAAACATATTCATATTCACGATCCTTTTTAGGGATGACTAATAAACCAATGCCTCAAGTTGAaactcaaaataaataaaaaataaggaaAAAAGGAGAAGACATTCGAGCGCCTAACCTGCTATTTTCTGTGGGTATTTCATGTTGAAAAGACGCTGTAATATTTTTACTTTACTTTTAAAGTTGTATAAATAatgtttatttacttatttaaatGATAGGCGCTATTATAATTTGATATTTTTTTGCTTGGTGTTTTTATGTTTACCTTGTCCACAGGTGAACCCGTTGAGCATGTGCGCTTTAGTGAACATGTGTTTCAGTAAAAAGACAAAAAAGTAGCCTAAAGAAACTTAATAAAATTATTGTTGATCAAAAGAACAAAACATCAGTATTTTTATTCACAGATATTGAGAATGGTGTTTGCAGATATTGTATTACCCGATTATTAGCCTACTTGATATTATTATCGAGTAACGCCTAATTTGGCATGATACTTTAGATTATATTTTAGGGGTTTGGGACGATATTTAGAATATGATATATGTGTGAGAGAATATTTCAAATATCGTCCTATGACAGGTGTGGTGCATcctactgtattatgttgtgccTCTGCTTTGGCCTGATGGAGTGGTCTATATATCTGAGAATTTAGACATGTCAATAAGTAGGCTGCTTAACTACCAAATATCTTGATATGTGTGTGGACTCTGAGTAAGAAAATTAGTTTTATTCTTTATAATGCCACACTTTATAGTGAGTGCCCTGACAGGTCCTCGGCGTAATTTGCCAACATGCCTCGCGTCATGTAATGTGGCATGACAGCGAGAGGTCAGAGAAAGGCCGTAAAACAAAACGGGATGATCTCCGAGTCCCGGAGTAAAAACAAATAGCCATACACAACACCAGAATATGAACTGTGCTCTGGATGACTGATGAGTAGTAGCCTATAAAAATAGCTATTGGccattttattattttaaatCAAAGATCATTTTAAAACCTGTTACATTTAATTTAGATAGGCTATAGGCATCGATTTCTGGGTGATATGCTAAAACATTTTCTAGAATTGAATCTGCATGAAAAGTGACAGGTTCGACCGTTGATCTGAACCATATTTCCTTTATCGTATAATTAATGTCAGCTAGCCTAATGTCTGCCACGACTAGGCCTATGGCGATGTTCTTATGAGAGTCTGCAAGGTTGATAGCTTACAACATATTTCATGTTTCAGGTATTTGAGTAAAGTCTGTTATTTATATTTGGTTATTAATGGTTCAGTTAAACACTTAACGTGTTTAGGAGGTATAGGCAGAAATGCTTGAAGCAGACCATGTTACGGTAGGCTAAAAAACGCAATGGCTGTGAAACATGTGGTTGTTTGATGTTATGATCAGACGTGATGCCGTTATTATTTTGTAATAGGGTTTGACCTAACCGTCTATAGATAGGCCCTTAAGtgtttttgttattgttgtttttttgcattaCGGTTTAGACTAGTATTTAAAAAGGTTACCACTAGCACACATCCCTGCCTATGATGAATATATGCCAAATAATGTTCTATTGGAACGTAAAGACGAGGGTAAACCGTGCATACACCTGAGGTTAAACTGTCTGTTCCCTCTTTATACGCGCTAACAGGATGTCAGCCCAAATGAGCAACGAAAATGAGAAATAGGCCAGTGTTTTTTCAATGGCTCCAGAGTTCTGGTTTTGGACAAACACCTGGATTTTCATCCAATTTGCAATTAATTACAGTAGCCAGTGAAAGAGACAAGATGTATTCCTCGAAACGTCTTTCAGCTGGAACAACACATAAATGCAGTGTTTCGGGTTTTGgataaaaagagagaggaagcaagcGAGGGGAAGAAAGGGGGGGCCTTGCGTTTCTTTCAAATCATGGGGACAAAATGGCTGAATATTTCCGTTTCTATTGAAAATCAGGGCAACTAGGGGACACACATGAAAAAGTATTTTTAGCAGTGTATAAAGTTGTCAGCGGTAATCAGCACTAATGATGCGGTCTACGGTCCCCGAGCAAATGAAGGGGCGCTCCCAATGTTTTGTGAGGGGAAGCAACACGAGTTTGTACCTCTTCAAAGAATGAACTGCTGTCATGGTAAAGTCTGCCAGCCTGGGTACGGAAGTCAGCATTTTTGTTTAGCGTGTGTGTTCTGGGGCAGCTGCTGCAATGTGAATTCGCAAGTAGGACGATTAAAAGGATTTAGCCTAATTATCAATTTATTGACTTTTCTGACTGACTTGTACGTTTGCAACAGTCATAACACGTTAATTGTGCTCCAATAAACATGACGAACATTTTGAATAATTAAGAAAATATGATATAATATGTTGGATATCAACCACTGAATCGGGCGAAATTCATTGACTATTTTTCCTTAGACCTTCAGCACTTTTATATATTGGTAACATGGTATCTTCTTGATTTTTGTGTCGTTTGTAATCTATATATAAAAATGAAAGCAGATGGGACCCAATTTCAATGTTTGTGTCAACCATAATTTGAAAGAAGGTTCTCTTTCTCTTGAACTCCAATCCCTCTATGCTGTTGAGTCTTTATGATCGAATCTGTCATAGCAGTTCAGCAGTGATACACAACGTGGTGCGAGCTCGTGTCAGCACTGACAGTAGGCTATGGCTACGTGGGCTATTTCTCCTGCAGCAGTTACATGATATTATCTTGCTATTTACCACATTAGTCTGTATTTCTACACGCTTGTCTTGAACTGATTCGTAATGATCACTAATCAATGTTAGTTTATCACAGGGTTATTTTATGCATATTTCTTCCAACGGTGATAGTAGTCTCTACAATTtctattttgattggtttaatcTCTGGCATATTTTTCTCCACTCTGCCTCTTGATGTTTATATTAAATCCCCTGGTTTTAGgcgtattttttatttaacaggcTCTGCTATAGCCTAGGTATGGTCCTGTGAAAAACATATtcaaatatatgtattattattattatcacctGTAGTAGGCCCTTTTCGTAAAACAGACTTAATAGCCTAACTTGCCATAGAGTAGACCATTCACCTCTTGCCTGAGTTTTTCCTGTTTTCCCTAAAGCGGATGAGGTCATTAAATTACGTAGAAACATAAGTGCATTTAAGAGCTTGTCCTCCTCCTTAATTAGCAAAGCTCTCAATGAGGACCCCACACTGCTCCATCCCTTTCCCATAAACACTCTGTCCCGTCTCCCCACAATGTGCTAATTTGATTTGACCACTTTCTTGATGTCGTCTCTGCAATGACTGTCGTTCAAAACGTTATATATCTTGGTTTGTTCTTCTTAGCTTGAATTTCACAATTTCATGGATTCTTCTCTATCTTTGTTTTATTGGTGTAGTAGGCCTATTATTGTTGGCTATATCGTCGGCCAGGGCCACACCAACTTTACTGCTCGTTCGTTCAGCAAGAACAGAACATTCACTCACTGGAAACACTCAGCTATCAATATTCGTATTAAAATTAATAAGAATcctgaatatattttatactctAGAAATGGCTTGTCTGTAAGTCAGTTATGTTCGTTCGCGTTTGTGTTGCATGTGTTTTATTGAAGTCAAATACTGTACTTTCTTCACTGGAACATTGTCTCTTTCATAAATGAAGTTCACAGAATGACTATAGTGAAGGTCTATTTACCATGTATTCACGTTAATAAACATTTTACATTAAGAAATTGCATGGAAGCATGCGTTTCACAGTAGGCTCCCAGAGAATGCCACGGATGACCTCTGGTGGTGATATTGGGTGGTAGCCTACTCTACTGCTTACTGGAGTGGAGAGACGCCGCTTGTCATGGTAGCCTACTTATTTACAATCACACAACCTAATCATTTAAAATTAAAATGGTTCCATTGTGTTAGAATGCATTATGATTTTCGAAAGCTATTTTTCTGGAATGCCTCCAAGCTCTAATAAAACGTACATAGCCTAATATCCTCCGCATAACCTGTTGTTTTATGTTTCATAAAACATCTCCAAACTGAAGTCAGCCTGAAGACTGGCTTTTTTCTGCATGCATGCACTTTTTTTTctttagggctcccgagtggcacagcggtctaaggcactgcatctcaacgctagaggcgtcactacagacaccctggttcgaatctaggctgtatcacaactggccgttaTTGGGAGTCTCATTGGTCGGCGCTccattggcctagcgtcgtccgggtttggccggtgtataaataagaatttgttcttcactgactagcctagttaaataaaggtaaaaatgaaaaaaatatacgTTTACACCAgcaaaaacaattaaaaaaaatacaaagaagCAACGGGTTTCACTTAGTTGTTCACAGTATGTGACATAGTCCCACCCTAACCTTTTGTCTAATCGTCTTGCACCGCACCCCTCTGGCAAGAGGCAGTCAACGGCAATTATGATGATGTGTAGGCCTCATAGAATTCGGGAGACgcgtttcagcaccatggacagggaGGTCACCgcgtttcagcaccatggacagggaGGCCACTgcgtttcagcaccatggacagggaGTGCAACCGGGAGGGCACCCGGTAGGGCACCCATGCACCCATGGACATTTCCGAGATACATAGTTCTGACTAGCACATGAACGTGGCATATAGCAGGGGTGCTACAATTTTTGGGCATGTATAGCAGGGGTGCTCTAACTTTTGTGCTTGGTGGGCCTAGGCGATGGGCCTCGGGCCGAACAaatatacataatttaaacaatAAGGTAAACAATAGCTTTTTCGGATCTTTAAAAGAAAAGTAATCCTAAAATGACACTTCAAACATTAATCAAATGGTAGCCATATAACTTGACCCCTAACAACACAGTCTGATTACCAGTATTAAATATGTATTAAAacttgtttaacctttatttaaccaggaagtgctcattgagatttaaaatctctttttcaagagcacctggccaagataggcagcaccaagtcattacaaaaatgacagacaaacaactacaagtaatctagtgaaaaccatagaattcacaagagtaaaACAAAATCAAAAACTTTTACCATTGTATCATAGAAACTGCAACCAAGTTTCTATGTTTATAAGACTAATAACTTTTTCCAGCTTTAAAGTaagtttcctgcaattctacatattttgctaTAAGGCGTGGAGAACATTTTGCACTTTTAAAGCATGTTTAATGCAATCTACTCATTATGCCAACGGTTGGAGTAAAATTGTTGCAGTTTTAATGCTATTTTGCCTGCagttctacatattttgccatgacttatgccatgtgcATATGATATCTgaatgagagtgactaacaaaatcaatgggggtccCTGGGCCCATGCCCTGGGTCCCCAGTCAGTAATTCGGCCAGGATTACTACaaggtttagatagctggctagattaACTTAACTAGAAATGTATAAAATGTTATCTGGCATGGGCTAATTgattgactgtcagtgactgacataacaagaggaaaactgctgagGCACTACCATATTTAAAGTAgcatgttgtgttttttttactaTGCTATCTCTCAACTGGGATGGCCTCCCGGAGTAAAAACAAATACACAACACCTCACTCAGAAAAAAAGGTTCCGTAGGCTATAAAACCACAGTAAGTGTAtctcactgggcacagacatcaattcaacaacGCAATTTCATTGAGATGAAGTGGAAACatcattgattcaaccagtgtctGCCCAGAGGGATGATTTTATTAGCTAGCATTTAGTTTGCAGCAGCCCAGGTTTGTATGAACCTTGCTGTTTGCCACTCTGACCTCGGCAACAATGTTGCAAAATAGGAATTCGATCTCCCCCTGCCAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244533 lncRNA upstream 22568 22442799 ~ 22443113 (+) True G1962991
TU2244528 lncRNA upstream 32477 22432896 ~ 22433204 (+) True G1962986
TU2244526 lncRNA upstream 33612 22431867 ~ 22432069 (+) True G1962984
TU2244525 lncRNA upstream 34374 22431077 ~ 22431307 (+) True G1962983
TU2244523 lncRNA upstream 37042 22428352 ~ 22428639 (+) True G1962981
TU2244552 lncRNA downstream 805 22474794 ~ 22475357 (+) True G1963010
TU2244805 lncRNA downstream 3312 22477301 ~ 22477547 (+) True G1963227
TU2244818 lncRNA downstream 13881 22487870 ~ 22488100 (+) True G1963240
TU2244828 lncRNA downstream 19291 22493280 ~ 22493490 (+) True G1963250
TU2244851 lncRNA downstream 32693 22506682 ~ 22507639 (+) True G1963272
XM_021584952.2 mRNA upstream 78971 22372957 ~ 22386710 (+) False ppm1aa
XM_021584951.2 mRNA upstream 78971 22372984 ~ 22386710 (+) True ppm1aa
LOC110504208 mRNA upstream 100467 22355974 ~ 22365214 (+) True LOC110504208
XM_021584948.2 mRNA upstream 147672 22297012 ~ 22318009 (+) False lrrc9
LOC110504207 mRNA upstream 215689 22223114 ~ 22249992 (+) False LOC110504207
XM_021584958.2 mRNA downstream 38605 22512594 ~ 22569987 (+) False mnat1
XM_021584959.2 mRNA downstream 40164 22514153 ~ 22569987 (+) True mnat1
XM_021584961.2 mRNA downstream 98468 22572457 ~ 22585958 (+) True slc38a6
XM_021584962.2 mRNA downstream 130299 22604288 ~ 22655351 (+) False prkcha
XM_021584964.2 mRNA downstream 131151 22605140 ~ 22655351 (+) True prkcha
TU2244488 other upstream 72725 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 154880 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 191018 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 597648 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 621671 21792183 ~ 21844010 (+) True G1962316
TU2245342 other downstream 443957 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 1131945 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1602532 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1886448 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1887099 24361088 ~ 24361482 (+) True G1965263

Expression Profile