RNA id: XM_036962421.1


Basic Information

Item Value
RNA id XM_036962421.1
length 3850
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110505629
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22665920 ~ 22696558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGccggggtttgagaagtcaatgaaaGAAGTGAAAAATGATTCGTTAGTCGTTCGTTTTctcgaaatctaaaggcacaacctagactCGAgacaatgtcttaagtagttaaacatgttattactccaacctcgtgatAGTGACAAACAGCCACGTTTTCATTTTCGTCAAAATGAATTGACGGCCTGCACATGCGCATTTGGGCGCGAGACAACCATTAGACCCGTAATGACATGTTTCTACGCATGAATTTAGCTTGCCAACAAGAGTGATCGGGGATTTCTTTTGGAAAAGCAGTTTCTACCTATCTTACTGTACGGTGTTTGACCTAGCTCCTCAGCTAACTAGATGCAACGTTGTTCCAAGCAACCGCTAGCGTGGCACCTCATGCCATTTCGAAGGAATTAAAACACATTCTTCTGCACTCATGTTTTGACTTCAGCGATGGAGGCTTGACCTCTCCTGATTTGCATTTATCAACAATTTCTGGAAACACAATTACGGATTTAATTTGAATAGCTACATGAATTTTCGCTTGTTTTTGTACGGGCCCGAAACACAGTTTATCTTCTTGGCTGAGGCTCAAAATAAGTCCGTCGTCATTAAAATGAACACAGTTGTCCCAGAAAAGAAAAGGGTGAGCTCGGAGCGGAGGAAGGAGAAGTCCCGGGATGCAGCGCGATTCCGGAGGGGGAAGGAGTCGGAGGTGTTCTACGAGCTGGCCCAGGAGCTGCCCCTGCCCCACAGTGTCACCTCCAACCTAGACAAGGCTTCTATCATGAGACTGGCCATCAGCTACCTGCACATGAGGAAACTGCTGAGCACAGATAAGGCAGTagagaaggagcaggaggagagtgagatggactcccagcTGAATGGCTCCTATCTGAAGGCTCTGGAGGGCTTCCTCATGGTGCTGTCTAAAGACGGGGACATGATCTATCTCTCTGAAAATGTCAACAAGTGCTTGGGTCTGGCACAGTTTGACCTGACAGGACTTAGTGTGTTTGAGTACACACACCCCTGTGACCACGAGGAGCTAAGGGAGATCCTGGTACACAGAACAGGGACCTCTAAAAAGTCCAATGGACCAAACACAGAGCGCAGCTTCTTCCTGCGGATGAAATGTACCCTCACCAGCAGGGGGCGCACTGTCAATGTCAAATCATCcacctggaaggttctccactgCTCAGGCCATGTGCGAGTCCATGAAGCCCCAACTGAGCAGAGCCCCATTGGGCACAAGGAGCCGCCTGTCTCCTACCTGGTGCTAGTCTGTGACCCCATCCCCCACCCCTCCAACATCGAGGCGCCATTGGACACCAAGACCTTCCTCAGCCGCCACACACTGGACATGAAGTTCACCTATTGTGACGAGAGGATCACTGAGCTGATGGGCTATGATCCAGAGGACCTGATAAATCGCTCTGTGTATGAGTACTACCATGCCTTGGACGCAGACTACCTCACTAAGACCCATCACAACTTGTTTGTTAAGGGCCAGGTGAGCACAGGCCAGTACCGCATGCTGGCTAAGATAGGTGGCTTTGTGTGGGTGGAGACTCAGGCCACTGTTATCTACAACAACAAGAACTCCCAGCcccagtgtgttgtctctgtcaACTTTGTGCTCAGTGGCATTGAGGAGGAGAAGATGGTGCTGTCTCTGGAGCAGACTGAGGACATGAGGTCTGTAAAGAAGGagctggtggaggaggaagaggacgaggGCCCAGAGGCAGAGGTGTCCCCTGTGCTCTTGAAGGAGGAGAAGGTGGATGTGATTAAGCTTTTCACCCAGGCAATGGAGGACCAGCCGCTGGCCAGCCTGTATGACAGACTGAAGGAGGAACCAGAGGCCCTCACCCTTCTGGCCCCGGCCGCAGGAGACACCATCATCTCCCTGGACTTCAGCAGCCCCGACTCTGACATCCTGCTGAAGGAGGTGCCTCTCTACAACGATGTGATGCTGCCCTCCACCAGTGACAAGCTGGCCCTGCCTCACTCTATGCTGCCCCCCAATGAGCAGCCCCTGATCCCCAGCGCCTCAGTGGACACCAAGGCAGGTCCAGACTCCTTCAGCACCCCAGGCAGCCACAGCTCAACTGAGCCTGACAGCCCGCTGAACTTCTGTTTTCCAATGGACTCTGACATCAGTGCTGCACTGAAACTGGACCTGGTGGAAAGACTGTTTGCCATCGACACAGAACCCAAGACACCTTTCACCTCACAGGGCATGGAGGACCTGGACCTGGAGATGTTGGCTCCATACATCCCCATGGATGATGACTTCCAGCTGCGCACCCTGTCCCCAGAGGAGCCCCCATCGTGTGGCCCAGCCCAGCCCCTGGAGAGCTCTCTGTGCTCTCCTCTGCACCTCACCCTTAGCTACACTGATTCCCCCTTTAGTGCCCCAAGAAGCCGGAAAGCTTCCCCAGCCCCGGAGCTGGCAGCTAGCCCTTGCCCTGCCTCCTTACTCACCATGAGGGCGCCTCcgatggacagagagatgtcCCTCAGGACACTGGCCACCCAGAACTCACAGCGCAAGAGAAAGTTGTCTCTGTCTCAGGCTGTCGGAATAGTAAATGGGGCATTGCTCCAGGACCCTCCTGGGCCAGGTAAAAAGCTCAAGGTGTCTGAGCTGGGCAGCTCTGAGGCTCCCTCCAACAGGACCATACTGCTCCTACCTACAGACCTGGCAAGCTGCCTGCTTGGCATCTCCTCGGAGGGCAGCGGCTCACCCTTCACCCTTCCACAGCTGACCCGGTATGACTGTGAGGTTAATGCCCCCGTGGTGGGTCGCCAGCACCTGCTGCAGGGCGAGGATCTGCTGTGTGCCCTGGACCAAGTCAACTGAGTCAACGCTTAGCCTGCCCCCTGCTGGACCAGACTAGACACTACAACTTCTCACTCCCTGTTCCCACCCACTGCCACTTTATTTGTCTCAGTGTGAGTTTGATATTATGCTTTGGCTGCCGTCTGCATCCACCAAGTGATCTCTGCAGCGTTCCACCTTGATGAACGTCATACAGAGTTGGTGTAAGGGATGTGGTAGTGTTAGCAGGTAGAGGCACGTAATTGTTTCTTTCTCGGGAGTCTAACAGCACACACATGGCACCTCCATGGATGGCTCTGTTGCCTGGTCTCCATGGAAACCGGCAGCGCTACTGCCAGCAGTGTATTGTAAGCTTTAATCGCACagtttatattaaaaaaataattccGATTAccagcaatatatatatattacggCTTTTTAAGTCGTTCTAATAGAATTTCAACCATTTTATTGAACTTTTCCCTCTGTATTCTTATGTCGTGTACAATGATAATATATGGTCCAGAAGGCTGAGTTCATTGTTTCATTGGATGTTATATCCCCATTACTGGTTACCAGTATTTTAGGCATAAGTGTGTGTTTCTTACTGTGCATTGACCAGGGGAACTTTCCGAGATGTCTTAAAGCCTTGTCATGAGTAATAAAATACATGTGGAAAGGTATAATTGGAACTAAATCCAGTGTTTGTTTTTAACAATGGAGGATTCGTCACTCAGCTTGATCATGTATTTCATATTTTTAGTAGAGACTCAAACACTTCATTTAGAATTTAGTGACGTGTGTCATATGATCATCATTTTACCAGTATAGTTATCTTATCATTAGTAGCAAGCAAGTGTTATGCTTGCATGTTCTCTCTTTTTTGTCTGTTTTATGGCATTGGTCCACATACTGTAGTGTTGTCATGCTTCCTGTTGCTGTGTAAAATAAAactgaattattatttttttgccttgtttaaaacatatatacactgctcaaaaaaataaagggaacactaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244914 lncRNA upstream 68929 22596553 ~ 22596991 (+) True G1963328
TU2244851 lncRNA upstream 158281 22506682 ~ 22507639 (+) True G1963272
TU2244828 lncRNA upstream 172430 22493280 ~ 22493490 (+) True G1963250
TU2244818 lncRNA upstream 177820 22487870 ~ 22488100 (+) True G1963240
TU2244805 lncRNA upstream 188373 22477301 ~ 22477547 (+) True G1963227
TU2244903 lncRNA downstream 1131 22697689 ~ 22699363 (+) True G1963317
TU2244995 lncRNA downstream 68100 22764658 ~ 22767587 (+) False LOC110504329
TU2244996 lncRNA downstream 70543 22767101 ~ 22767587 (+) True LOC110504329
TU2245151 lncRNA downstream 76883 22773441 ~ 22773648 (+) True G1963551
TU2245152 lncRNA downstream 77118 22773676 ~ 22773930 (+) True G1963552
XM_021584962.2 mRNA upstream 10569 22604288 ~ 22655351 (+) False prkcha
XM_021584964.2 mRNA upstream 10569 22605140 ~ 22655351 (+) True prkcha
XM_021584961.2 mRNA upstream 79962 22572457 ~ 22585958 (+) True slc38a6
XM_021584958.2 mRNA upstream 95933 22512594 ~ 22569987 (+) False mnat1
XM_021584959.2 mRNA upstream 95933 22514153 ~ 22569987 (+) True mnat1
XM_021584974.2 mRNA downstream 31171 22727729 ~ 22731299 (+) False LOC110505633
XM_021584975.2 mRNA downstream 31171 22727729 ~ 22731299 (+) True LOC110505633
XR_002470588.2 mRNA downstream 68139 22764697 ~ 22768365 (+) False LOC110504329
LOC110504209 mRNA downstream 74004 22770562 ~ 22780040 (+) True LOC110504209
XM_036962238.1 mRNA downstream 96526 22793084 ~ 22865803 (+) False LOC110505634
TU2244488 other upstream 272964 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 355119 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 391257 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 797887 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 821910 21792183 ~ 21844010 (+) True G1962316
TU2245342 other downstream 221388 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 909376 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1379963 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1663879 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1664530 24361088 ~ 24361482 (+) True G1965263

Expression Profile