RNA id: LOC110505630


Basic Information

Item Value
RNA id LOC110505630
length 1321
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110505630
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22678700 ~ 22680020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAGTGGCTTTGAGGCGAGCCTTGCATTTAGTTTTCAAAGTGGGAGACAGAAGCAAAACGGCCGCCTTTCACCGAGATATGCTCGGCATGAAGATTGTGCTTCACAAAGAGTTTGAAGAAGGATGTAAGGCAACTTGTAAGGGCCCTAATGATGGAAAATGGAGCAAGACAATGGTCGGCTTGGGGCCAGAGGATGATGACATCGTGACTGAACTCATCTACAATTATGGAGTGGGAGAATATCGCCACGGTAATGACTTCCTCGGTTTGACTTTGCAGTCTTGCCAGGCTGTCAGCAATGCTAAGCGTCTTGGTTGGCCCCTCACTGAGGTTTGAAAGGGCCTCTATCTGGCTGAGGCCCCAGGAGGTTATTGCTTCTACCTGGTGGACAAAGAAACAGCCTCCCAATGATCCTGTACAGAAGGTGTGTCTGGCAGGGTCTGACCAGCAGAAATCAACACAATACACTGCTGCTCCTCCCTTCTGGGGATGAAGGTGAACAGGGGAAATGAGAAGACTGTGCTGATGGGATTCTGATGGGATTCACAGACACTCACTGTAAACTAGAGCTTCACAACATTGTTGGGACAGCCTTCAGGCGGATAGCATTCTCCTGTCCACATGAGCAGTGGGCAGATCTTGAAGCCTTGATGACAAAGAGTAAGGATTTCATGGTTTCCATCTTAGTTAGCCTGGACACCCCTGGGAAGACTACAGGTCATTTGGGCTGATTCAGATGCCCGTGAGATCTGCTTTGTTGTTtgagtgtttattgtgttgtgggTTCCCAGACACAAGTTCTTTAAATCTCTCTGTTTTCGCGAATTCGTCTTTTGACCAATCGgtgactagtccaacgctctaaccactaggctaccctgccgcccctatgtGAACAGAGCCTTTAGTGTTTCTGTGTATGTTGCAGTACCCTCTCCTTTCTTTTTCCCCATAGGGTTTTCATGTCAAATAACAATGTATTCAAAGTGcctactattatattctaactatagaattataataataattagtgttttgatctaaatcgcAAGTCAAATTGCAATTGCAagatttggttaaaaataaggcttCATTTTTTTTTGGACAATATCCTGCAGAACTATGTGACAATGTGGAATTGCAGCAATTGATGAcattattttaaaacaaatgtaaataaaaattaaaaatgtaaaaagcaaATTTACAATTTGTATTATTCAAAAGCATCAAATACCGACATACTGTGAAAATTTGGAAAAATACAGTGAtgtgatattttggccatatcgcccatccctactatccatataggccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244914 lncRNA upstream 81709 22596553 ~ 22596991 (+) True G1963328
TU2244851 lncRNA upstream 171061 22506682 ~ 22507639 (+) True G1963272
TU2244828 lncRNA upstream 185210 22493280 ~ 22493490 (+) True G1963250
TU2244818 lncRNA upstream 190600 22487870 ~ 22488100 (+) True G1963240
TU2244805 lncRNA upstream 201153 22477301 ~ 22477547 (+) True G1963227
TU2244903 lncRNA downstream 17669 22697689 ~ 22699363 (+) True G1963317
TU2244995 lncRNA downstream 84638 22764658 ~ 22767587 (+) False LOC110504329
TU2244996 lncRNA downstream 87081 22767101 ~ 22767587 (+) True LOC110504329
TU2245151 lncRNA downstream 93421 22773441 ~ 22773648 (+) True G1963551
TU2245152 lncRNA downstream 93656 22773676 ~ 22773930 (+) True G1963552
XM_021584962.2 mRNA upstream 23349 22604288 ~ 22655351 (+) False prkcha
XM_021584964.2 mRNA upstream 23349 22605140 ~ 22655351 (+) True prkcha
XM_021584961.2 mRNA upstream 92742 22572457 ~ 22585958 (+) True slc38a6
XM_021584958.2 mRNA upstream 108713 22512594 ~ 22569987 (+) False mnat1
XM_036962424.1 mRNA downstream 637 22680657 ~ 22696558 (+) False LOC110505629
XM_036962425.1 mRNA downstream 648 22680668 ~ 22696558 (+) True LOC110505629
XM_021584974.2 mRNA downstream 47709 22727729 ~ 22731299 (+) False LOC110505633
XM_021584975.2 mRNA downstream 47709 22727729 ~ 22731299 (+) True LOC110505633
XR_002470588.2 mRNA downstream 84677 22764697 ~ 22768365 (+) False LOC110504329
TU2244488 other upstream 285744 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 367899 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 404037 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 810667 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 834690 21792183 ~ 21844010 (+) True G1962316
TU2245342 other downstream 237926 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 925914 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1396501 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1680417 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1681068 24361088 ~ 24361482 (+) True G1965263

Expression Profile