RNA id: XM_021584980.2


Basic Information

Item Value
RNA id XM_021584980.2
length 2983
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110505634
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22793084 ~ 22865803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAATTCAACAGCGGAACTCATGCATTGAGGAAATTGGTCCATCAACGGGCAGTAAATACAGTGACACCGTGTCACAACGTGCTCATGAAAATCAGACACCGTCTATTTTGCCAGCAGGGCTATGTCCTCGGCAGCAACCACACCTCCATCTGTGGACAAAGTGGACGGATTTTCACGGAAGTCTGTCAGGAAGGCCAAGCAGAAGCGATCGCAGAGTTCGTCCCAATTCCGGTCTCAGGGCAAACCCATCGAGCTCACGCCCCTGCCCCTGCTCAAGGACGTGCCAGCGCCGGAGCAGCCGGAGCTGTTCCTGAAGAAGCTGCAACAGTGCTGTACTGTTTTTGACTTCATGGACACGCTGTCTGACCTAAAGATGAAAGAGTACAAGCGCTCCACGCTCAACGAACTGGTGGACTATGTCACCGTCAGCAGGGGCTACCTGACAGAACAGGCCTACCCGGAGGTTGTCAAAATGGTGTCTTACAACATATTCCGGACCCTTCCGCCCACGGACAGTAATGAGTTTGACCCAGAGGAGGATGAACCCACACTCGAGGCCTCATGGCCGCACTTACAGCTGGTGTATGAGTTCTTCATACGATTCTTGGAGAGTCAAGAATTCCAGCCCAGCATTGCCAAAAAGTACATAGACCAGAAATTTGTTCTACAGctCTTGGAGCTATTTGACAGTGAGGATCCTCGGGAGAGAGACTACCTGAAAACAGTCTTACACAGAATCTATGGGAAATTCCTGGGGCTGAGGGCTTTTATACGAAAACAGATCAATAATATTTTTCTACGTTTTGTTTATGAGACTGAGCACTTTAACGGGGTTGCTGAGTTACTGGAGATCTTGGGAAGCATAATCAATGGTTTTGCCCTGCCGCTCAAAGCAGAGCACAAACAGTTTCTGGTCAAAGTGTTGATCCCCCTCCACACTGTCAGGAGTCTGTCCCTCTTCCACGCACAGTTGGCGTATTGCATTGTACAGTTCCTAGAGAAAGACCCAGCGTTAACAGAACCAGTCATCAGGGGTTTACTGAAGTTCTGGCCAAAAACCTGCAGTCAAAAAGAGGTTATGTACCTGGGGGAGCTGGAGGAGATCCTAGACGTGATTGAACCGACACAGTTCGTCAAGATCCAGGAGCCGCTTTTCAAACAGATCTCCAGATGCGTATCCAGCCCACACTTCCAGGTGGCAGAGAGGGCCCTGTACTACTGGAACAACGAGTACATCATGAGTCTGATTGAGGAGAACTCCAGCGTTATCTTACCCATCATGTTCGCCAGCCTGTACAGGATCTCCAAAGAACACTGGAACCCGGCGATAGTGGCGTTGGTGTACAACGTACTGAAAGCCTTCATGGAGATGAACAGTACCTTGTTTGATGAGCTCACAGCTACTTACAAGTCAGACCGCCAGCGtgagaagaagaaggagaaggagagggaggagcttTGGAAGAAGTTAGAGGACCTGGAGCTGAAGAGGAGCCTTAGGCGTGACGGGATGATTCCCACTTAACGAAGCGCCACGCTCCTCTCCCATCCATGTCCACTGGAGCACGCCCCGTGGATCCTGTACGGCCATCTGGAACGGCATGGAGCGAccgtgttttttttgtgtttttttttctgtattGTGCGACTTACTTTATGGTAGATTCACACGTTGTTTCATTATTTCAACAGCACTGTAAATAACTTTTATCCTTAAACTGCTATTATTGCgaaataaaaatggtaaaaaaataaaataaaacgcgATAAGGAACTTGTGTGGGGGTAAAAATATACTTTGGACATTAAGACTTGAAATGAACAGCAAAGTTAAAACAATCTGTTAACTTCCCTCCTATTTGAGAACCCTACCCACTCTACAAACCCATTTTCCATCTCTGGTTCTACtctttgctctttctctctcctctctgtccctctcacaaTTGGTGCttctgtacctctctccctttgtGGGACGTCCTGACTGAGTGAGATACCTGGGAGGCCCTGCCCTGACCAAGAGGGCACCCCTTCTCTCTGTAAGGACCACCCTCTGACCCCTCCTGACCTGACTCATGCTGAAGCCATgctggtattatattatatggaCCCAGTAGCCATGAGGAAATGAATTTAACCCCTCGTCCCTCTCAACCCCTCCTCCAAGAGGCGAACATGTTAAGGTCCTGTATGTACAGggactaaaataaaaaaaaacaagggaAGATCTCCATACACATACTTACATTCATTCTCTCGCACCATTTTTCTCCCCACTTCCACATTTGTTTCTTTTCacttgtgtgtgtttctccccaatgattgattgatttctgTCAGTTCAGTTGTCTCTTTGGTTTTGTGGACTTTGACCCTGCAGTACCAGGTAGCCTGGTATCagtctggtactggtaccctccAGCCACACAGAAAATCtgaatttttttaaaaacaattgCGAGCTATAGAGGAGCACCAAACTCGCCTATTGTGAAAAGGAGTGTCACTCCCAAGTGTGCTTTACACAGTATTACAAACCTGTATATTGTTATTAAATGCAGTACACTGATATATTGTATCTTGTAGTAATTTTGCATATATTTTTGCTTGGGAACAGCCAAGAAGTATTCTGTATATGAGTTAATATGGAACAAGACTATCTGGTATTTATGATTCGTTTTTTCTCTGTTTCCTTCTTAGTTTTTAATCTCTCTTTTGGGATTTTTATTGTTTCTTTGAACATCAGATATTTTTTATTGTGGAGTGGAAGAGGGAATGGCAGAGAGGGATGGCTTGGCCCAGTTCATATCCCGTTTAAATTTACATTAAGTTCAGCATTTTTGCCCCCTTAAAGAATTTGTGCTTTAGGGTGGCCCAGATATAATATGAATGAAAAGAAGAAAAAAGGGGTTGAAGAAATACacgtttatttaaaaaaaaaaaaaatcatcataatTAAACCTGTTTTGTGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245178 lncRNA upstream 3063 22792165 ~ 22792399 (+) True G1963578
TU2245173 lncRNA upstream 8965 22786038 ~ 22786497 (+) True G1963573
TU2245152 lncRNA upstream 21532 22773676 ~ 22773930 (+) True G1963552
TU2245151 lncRNA upstream 21814 22773441 ~ 22773648 (+) True G1963551
TU2244996 lncRNA upstream 27875 22767101 ~ 22767587 (+) True LOC110504329
TU2245212 lncRNA downstream 2644 22868447 ~ 22868871 (+) True G1963606
TU2245274 lncRNA downstream 4940 22870743 ~ 22871084 (+) True G1963668
TU2245291 lncRNA downstream 16814 22882617 ~ 22883005 (+) True G1963685
TU2245299 lncRNA downstream 21005 22886808 ~ 22887127 (+) True G1963693
TU2245337 lncRNA downstream 47111 22912914 ~ 22913116 (+) True G1963729
LOC110504209 mRNA upstream 15422 22770562 ~ 22780040 (+) True LOC110504209
XR_002470588.2 mRNA upstream 27097 22764697 ~ 22768365 (+) False LOC110504329
XM_021584974.2 mRNA upstream 64163 22727729 ~ 22731299 (+) False LOC110505633
XM_021584975.2 mRNA upstream 64163 22727729 ~ 22731299 (+) True LOC110505633
XM_036962425.1 mRNA upstream 98904 22680668 ~ 22696558 (+) True LOC110505629
XM_036962242.1 mRNA downstream 442795 23308598 ~ 23315795 (+) False LOC110505640
XM_021584990.2 mRNA downstream 446788 23312591 ~ 23315795 (+) False LOC110505640
XM_036962241.1 mRNA downstream 446788 23312591 ~ 23315795 (+) False LOC110505640
XM_021584992.2 mRNA downstream 446789 23312592 ~ 23315795 (+) True LOC110505640
XM_021585003.2 mRNA downstream 543556 23409359 ~ 23421308 (+) False LOC110505643
TU2244488 other upstream 402506 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 484661 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 520799 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 927429 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 951452 21792183 ~ 21844010 (+) True G1962316
TU2245342 other downstream 52143 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 740131 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1210718 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1494634 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1495285 24361088 ~ 24361482 (+) True G1965263

Expression Profile