RNA id: XM_036962241.1


Basic Information

Item Value
RNA id XM_036962241.1
length 2247
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110505640
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23308598 ~ 23315795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTGATTTGTTGTTGGCAGCGAGCTGGGCGTCCGAGATGattatatcaaataaaataaaaaaaattcactGCAACTAAAACGCCAGACCCGACAAATTACAATTCACATCGTATCCACACATCAGCTAAGGAGGAACCCGCGCCTTTTCCTCGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGGATTTGCGCAGGAAAACAGCGAACTCCAAGCGAGCAACGATGATCTGTATTTACCATCAGCACAAAAAAGGGAAACAATACGTTTCGGGGAGAGCTCAGTGGCAATAGAGGATGAAATGAGAAAGGAGTATACTGCTTGAACTTGTTATACAACCTCAATCACTGGACGGATATTTTAAACACTGAAAAAGTCTAAAACGACTGGGAAACACACAAGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCAACAACGGTACTACGGTGACCGGCACTGACAAGAAAAGCAATGTGCAGGTCACCCAGTCAACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGAACCTCCGAGCTGGCAGTCCTCGCACCCCACGCTACGGGAGAGGAACGCCTTGATGTTCAACAATGAACTCATGGCCGATATCCATTTCATTGTTGGTCCCTTCGGTGAATCTAAGAAAGTGCCAGCGCACAAGTATGTGCTGGCAGTGGGTAGCTCAGTCTTCTGTGCCATGTTTTATGGGGATCTTGCAGAGGAGTCGTCCGAAATCCATATCCCAGATGTAGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGTGATGCAATAGACCTGGAGGCTGACACCGTGCTGGCCACCCTGTACGCTGCCAAGAAGTACATTGTACCCGCCCTGGCCAAGGCCTGCGTCAGCTTCCTGGAGACTAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACGCGGCGCTGCTGGGAGGTGATTGATGCGCAGGCAGAGCTGGCCCTGGGCGCAGAGGGCTTCTGTGAGATTGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACCCTCAACACCAAGGAGGTGGTGGTCTTTGATGCTGTCATGAGTTGGGCCACAGCAGAGTGTAAGAGGCAAGGACTGGGAGAAACCACCCGCAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACCCTGGAAGAGTTCGCTGATGGGGCAGCCCAGTCAGACATCCTGACACTGGAGGAGACGCATGACGTCTTCCTGTGGTACACAGCGGCCACCAAGCCCAAATTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCACCCCAGAAGTGCCACCGGTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTCGCAGTGGACAAGCGGATCTTTATTGCTGGACTGGGCCTGTATGGGTCAAGTGGTGGGAAGGCAGAGTACAGCGTCAAGATTGAACTGAAGCGTCAACGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTATCGGACGGATCAAGCAGTACATTTTCTGTATGGTTTGAAAACCCGGTTCAGGTGGAGCAGGATGTCTTCTATACGGTGAGTGCCGTGCTGGACGGGAATGAGCTGAGCTATTTCGGCCAGGAGGGCATGACAGAGGTACAGTGTGGAAAAGTGACATTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCAGAGCTGGTATTCTATGCATAAACTGAACTGGTCATAACGGACAAGTAGAGGACATATGGACTGTACATCCATGTGTTTAAGCCTTCTAAATAATGTAGCATTATTATGTCACTAAACAAAATACTATTTTTAAGTGAAGGAATgctgttatttattttaaaattattttaattATTAACTGCAAAAAGCAGTCCCTTGTAAAAAGTCGTATTGCACTTGTGGACAGCCtctgcaatgtttttttttgtacataaaGTACGGTTATATGGTGTGCAGCTTGATGCTGATCAATCCTGATGTTCTGTGCGAGAGCTTATGAACCTGCAGAAAATCATAAAAGTTATGCGAGATAAGCCACAGATGTTGCTGCTCATCATTATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245634 lncRNA upstream 59044 23253326 ~ 23253547 (+) True G1964001
TU2245632 lncRNA upstream 60846 23251358 ~ 23251745 (+) True G1963999
TU2245614 lncRNA upstream 90082 23222205 ~ 23222509 (+) True G1963981
TU2245578 lncRNA upstream 138354 23174030 ~ 23174237 (+) True G1963948
TU2245575 lncRNA upstream 140646 23171128 ~ 23171945 (+) True G1963945
TU2245680 lncRNA downstream 4921 23320716 ~ 23322247 (+) True G1964046
TU2245689 lncRNA downstream 20001 23335796 ~ 23336014 (+) True G1964055
TU2245693 lncRNA downstream 23233 23339028 ~ 23339433 (+) True G1964059
TU2245694 lncRNA downstream 24921 23340716 ~ 23340915 (+) True G1964060
TU2245726 lncRNA downstream 78329 23394124 ~ 23394367 (+) True G1964087
XM_021584978.2 mRNA upstream 446788 22801898 ~ 22865803 (+) False LOC110505634
XM_021584976.2 mRNA upstream 446788 22801899 ~ 22865803 (+) False LOC110505634
XM_021584981.2 mRNA upstream 446788 22822107 ~ 22865803 (+) False LOC110505634
XM_021584982.2 mRNA upstream 446788 22822131 ~ 22865803 (+) True LOC110505634
XM_021584979.2 mRNA upstream 446819 22801860 ~ 22865772 (+) False LOC110505634
XM_021585003.2 mRNA downstream 93564 23409359 ~ 23421308 (+) False LOC110505643
XM_021585002.2 mRNA downstream 96085 23411880 ~ 23421308 (+) True LOC110505643
XM_021585006.2 mRNA downstream 141863 23457658 ~ 23462167 (+) False LOC110505646
XM_036962668.1 mRNA downstream 141921 23457716 ~ 23462167 (+) False LOC110505646
XM_036962669.1 mRNA downstream 141930 23457725 ~ 23462167 (+) True LOC110505646
TU2245342 other upstream 393905 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 919635 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1001790 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1037928 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 1444558 21838506 ~ 21868033 (+) True LOC110505603
TU2245829 other downstream 290139 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 760726 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1044642 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1045293 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 1249936 24565731 ~ 24567147 (+) True G1965396

Expression Profile