RNA id: XR_005039538.1


Basic Information

Item Value
RNA id XR_005039538.1
length 1681
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110505647
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23508035 ~ 23518659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATAACTTCCTTGATGGCAATGGCTTTTATTGAATACCTAAGTAGCCTATATAATTATCTGACTTGACCTTTTAGTTACAACCTGTATGTATAGTTGTTGGTATGTAGCTAGCTACCCAATGTGTCAAAAGTTAGTGTGGCTCTTGTGAAATGTCGCCACTGACATTGTCAAACTCAATTACGAGACGAGaccccgtgtggctcagttggtggcGCTTGCAACGCCTGTGTTGAGTTCGATTCCCACAGGGGGCCAGTACGAAAACGTATGCACTAGCTAACAGATAGCCAACTGATGTCGCTTTGCCGTGAGCTAAAACACAGCAAACGTGTCTAACGTTAACACATGTATGTATACGCATTCTTTCACTTCAATATACAAAGAGATCGGGTTGATTAGCCACCGGGAAGCCAGACTGATGAATCTAGTCAGGAGCTGCTAGGATACCCTGACCTCTGGAATGAGGCTCTCCAAGCAGTTGACCTTCTCATTCTGACAAACTGGTTCCCACAGGCTGAGAGGCAACTACTGGCCACTGTGCAGGAAGACAGCTTTACAACACTGAGGAGGATCCTTCATAATGAATAGTCAGTGCATCAATTCTGTGCTCCAAAGAGCAAAGATGATGAGCCAAACTCTGATGCTCATGGCACATATAGTCTGTTGGCAAGAGCTACAGGACTTCATAAAAAGGTATGTCAATGTTGAAAAGAAACACCTTCAGAAACAAGCAAGAATGGGCTTGTCATGTACAATGCACTTCTTCAAGACTTTCAACACCTGCAATGAACTCAAGCAGTATTTTCCAACGATTTCCAGAGATGACACAAGTTTTGACTGTGTTTAAACCATTTCAACACTTGAGGGGATGGAAGCTCTTGCTTTGAAGTTTCTCCTGGAAAGACCAATTAAATTTGCACAGGTGCATTCCTGAATGAAAACATTAAGAGAAACTGGACGATGTTACAATGTTTTATGATCCCCAGATTTTCCTGAAGAAGTATTTCAAAAGAGAGGATGAACAAATGGAAAATCAAATGGAAGAGATTGAAGAAATGTTCCAGAACCTTCCCAAAGACCAGGACATGCAGAAGATTGTGATTAACAAAGCCTTTCTGTACCTCCGCCCTTCTGTACCTTCAACACCTGGTGCAGAGCAACCATGGGAAGCCGGTGAAGAGATGGGATTAACGTGGGCAAAGAATGACGCATGATGCCGAGCTCTTTTACTCCATATTCTCAGGCCTGAATTGTGATGTTGAACAGTGGAACCTCATACAGCTGAAAGTGAGAGAAGTACTGGAGAGCAGCGATGTTGAAAGTCTCAAGGTAACAGTCAGTGAGATACTGAGGGACTGCTCCAGGACAAGTACGGAGCACCTGCCAGCCCTGCTGCGTTGGAAGGGAGGCCTGTCACGGACACAGACCCGGGAGGTGCTGGAGGCAAACCAGGAGGTGTACCTGATTTACCTGTCCCAAACAAGGTCTGGAACCTGGTACGGCTGCCTTCTCTGTTGCTGAGGGTGGGACGCCTCAGGTGGATGACCGCACTAAACATGACCTTCAAGTTCGCAACTGACCGCACAATATTTGGAGCTCTGTTTAAAAAGTTGGCAAAATATGTAAAGGTACTTATTATTTTTAATGTATCAAAGATAAATAATAAGATATATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245737 lncRNA upstream 56 23507033 ~ 23507979 (+) True G1964098
TU2245746 lncRNA upstream 1871 23505534 ~ 23506164 (+) True G1964104
TU2245759 lncRNA upstream 67541 23440187 ~ 23440494 (+) True G1964116
TU2245755 lncRNA upstream 73774 23433513 ~ 23434261 (+) True G1964112
TU2245751 lncRNA upstream 78902 23428858 ~ 23429133 (+) True G1964108
TU2245849 lncRNA downstream 41347 23560006 ~ 23560391 (+) True G1964197
TU2245856 lncRNA downstream 48807 23567466 ~ 23567682 (+) True G1964204
TU2245878 lncRNA downstream 77306 23595965 ~ 23596347 (+) True G1964226
TU2245947 lncRNA downstream 209798 23728457 ~ 23728696 (+) True G1964278
TU2245957 lncRNA downstream 241610 23760269 ~ 23760488 (+) True G1964288
XM_021585006.2 mRNA upstream 45868 23457658 ~ 23462167 (+) False LOC110505646
XM_036962668.1 mRNA upstream 45868 23457716 ~ 23462167 (+) False LOC110505646
XM_036962669.1 mRNA upstream 45868 23457725 ~ 23462167 (+) True LOC110505646
XM_021585003.2 mRNA upstream 86727 23409359 ~ 23421308 (+) False LOC110505643
XM_021585002.2 mRNA upstream 86727 23411880 ~ 23421308 (+) True LOC110505643
XM_021585021.2 mRNA downstream 177814 23696473 ~ 23704474 (+) False LOC110505653
XM_021585020.2 mRNA downstream 177815 23696474 ~ 23704474 (+) True LOC110505653
XM_021585023.2 mRNA downstream 186005 23704664 ~ 23707351 (+) True hao1
XM_021585024.2 mRNA downstream 199832 23718491 ~ 23725669 (+) False napba
XM_021585025.2 mRNA downstream 201968 23720627 ~ 23725669 (+) True napba
TU2245342 other upstream 589349 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1115079 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1197234 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1233372 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 1640002 21838506 ~ 21868033 (+) True LOC110505603
TU2245829 other downstream 87275 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 557862 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 841778 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 842429 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 1047072 24565731 ~ 24567147 (+) True G1965396

Expression Profile