RNA id: XM_021585012.2


Basic Information

Item Value
RNA id XM_021585012.2
length 4124
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110505649
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23531467 ~ 23549311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTTATTGCGTTCAATTTACAGCCTACACATTTTGGGGTttttatgttccggccccctgaccatccattCAAGAAATAATCACCCTGGGGCTGAatgtagttgatgatccctgctataGGGCCAATCATAGATAGATGTTGAACAATTAGGAGAATTCCACCTAAAGTAAGCTCAATAGTTATCACCCCTGAGCCTTAAGGTCAGCAACAAGTGgtaccatatatactgtaatttCCAGTTTAGATGAGATCAACAAACAAGTAGGCCTAATTGACATGTGGTCATTGTGGAAGTTGACTAAATATTGTCTACAGTCGCCCTCCAGTGACAAGCAACAGGAATGACAGGCGAATATTGCTTGGCTAGTTCTCTTTTCTAAGCATTGTTTTACTATTTAGAGATAGACCTGTCGCCTATTTTGCGTAGTGTAGACGTTGAAATGTCTCGAAACTATGACTGAAAATAGTGCAGTCCGGTTTATCACCATCGGTGTCATTTCATTTGCCATGGACGTAGGCCTACAACAAATATTTTACACCAACAAATACAGTGTAATGATTAACTTATTTTCTAACAATAAACCGCTTGAGTCTCTGAGTCACATGGTGATTTTTGCTTCTCTCATGCTGCTTGGCATGCGGCCTAAAGGGGATTTTATTTGTCATGTTTCTTGCAGTCGTCTCAACTTCCAACTTCGCGCAGGTTGTCTCGTGACCACATGACTGCTCTCTAGATCCCTGGCGAGGTGAACATGAAAACAGCTGTAAACCCATGTGAAAACCCCTGGTCTGGTAGGCTACTCACTCACTTCTCCAGACAGTAGAGTTGCTCAGGTCAGGTTGGTTTCAGACAACTCCTTGCCTGAAACAAGGGACATTCGATGCTAAGCAGAGATCAGATGGCAGAGATTGGGGAACCTGGGGACATGGAGGAAGTGAATGAAGCTCAGGGTCTAGAGGGGGACAGATCCTCCCTCAAATCCACCATGAAGAGGAACGTGAAGACACAATCTGACAGCCCAGTGAAAGAGAAGAAACTGGGGATGATGAAGCAATTCAGGGAGAGCATCAAGCGGGTTGGAGAGAGGAGTCATCTGGCCTCAAACAGCAAAGAGTCAAAGGACAAATCCAATTCAGAACAGGGGGGACATGGTATTGACCCTGAAGTTACCTCTCCAACCCATCAGCTGCCACCCCCTCCCTCACCATGGTCTAGGTGGGTCCTtccagaggaaggagggaggagagagtgcagAAGATTCACTCCAGAAAAAGCACACCAGAACGCACTCAGACCCATCGGCAATTGGAGACTCTCTTCTAAAGAAGGGGGCTTCCATCCGACGGAGTTTGCGACTCGTGGGAAATAAGAAAGACAAGGCCCTCAAACAGGAGCAGCTCCAGCCTGTCACTGAGATCACTgtggatgagaagagagagagggagaaggagagggtagaGATAAAAGAGTCATACATACTCCCAGAGATACCCCTCACACCCCTCTCAGTGATGCAGATCAATAAGCTGATTGGGATGGAGGTGCTGGAGGAGGCCTATCTGAACCTCCTCTCCCTGTGCCAGGAGTTCCagcgggagagggaggagtgcaCGGAGGAGGCCTCCTCTATGGAGCTGGCCAAGAAGGAGAAGGACCTGAGGCTCCTTTACAATGCCCTGCTGGACAAGGTGAAGGAAATAGTGCGGGACTCCAACTCCTTTCCCTCTCGCAACAAGGATCTCTTGGTGCATGTGGCCCGTGTCatccaggaggaggagaagagggaggcaGAGCCTGGGGTCGGGGGCGTGGTTGGGCCTGGGGGTTGGCGGGGGGCCTGGAGAGAGGCTGTGAGCGAGGGTGTACAGGCCACGCTGAAGAGTGTTCACTTGGACAGGCCCGAGCAGAATGCCTCCTGGCTGGCTATCCACCTGGGTATGCTGGGCAAGGCCATCGTGGAGGACTTGAAGAAGGTGAAGGGAGAGCTGCAAGGCTCTTACCCACCCAGCTTCGATGTGTTCAGCACCTATGTGAGCTGTTACCATGGTGCTGTCAGCCAGCACCTGAAGAGGCTTCAGCAGCAGGTGACAGATCTGAAGGACTACTACACCCTGCTGGACTGGATCATCAATCACTATGAGAGTGAGAAGATAATGAGTAGTCATTCATTGAGACCAGAGATGGAAGCTGAGAACATAGGCCTCTCCCTGGAGGAGGGTTTCCTGGACCAGCTCAAGGGGAAATACTGCATGCGGGCAAAGGAGGAAATGAGAGCTTCACTGGATAAAATATTAGAGCTTGAAAATGAGGACATGTGGATAAAGAAACAGGCACCAGCGACTGATGATGAACACTTCTTTAACTCTGACATACACATGGATATCTGGACGAAAGTTAAGAGCAATGCTGTAAACTCCAAGAGGATTGATGCAGACCTGGAGATGGGAGTAGTCTGTTCCTGCCTAGAAGAGTTACAGCAGTTTCCCAAGCAATTTGAGAACAAATTTAGGTACTGCTGTAACAGTATGGAAAACCCTTCACTTTGGGCTGACTATCAGATAACCTACATCAACAGCTTTAAAGCTCTTAAGGAGCACATGGAAGGTTATAGGGAGTGCTGCCCGACACAGGTGGACCATCTCAGCAGAGAGGTGGATGGCTTGGTCCATAGACTGGTCCAGGGCCTGGAGGACCAGTTTAAGAATGATGTCAGGCCTTACCTCAGGAGAATGATGACGAGGAAGTGGCTCTCCACAGATGAGGACTTCCAACAGCTGTTGAGCAGGACAGAGAAGCTGTCCCAGCGCTGTTCTCAAATGAGACATCCATATGTACAGATGTTTGTGAGCAGCTTGCACTACTATGTGGTGAAAGAGTATGTCTCCCAGCTGATGAAAAACAACTACTCCTGTAAGAACAGGAAGCATGACAAAGCAGCCACCAAGATGAGGGTGCAGTGGGATGAACTCAATGATTTGTTTGAGGAAATGAAGACAACCCATGACTGGCTCCACCCAGTAGGAGACCACCTGAGTAACATAATTGGGGAAAAGAACAAGAGAGACATCAAGAACCACCTGAAACATTTAGTAGCGGACTACCCAGACATCAGTAAGAAGCACCTATCGGCCGTCCTGTACTTCAGGGGCTTGGTGCGGGGAAGGGAGAAGCAGGTAATCCTGCAGTGTCTCACTGAGCTGAAGAAGAAACTAGGAACTGCAGGGAACACTGGAGATAAAAAAAGAGGCCTCTTCATTGATATGCAGGTCACCATCGCCAATACAAACTGTCTGGCTAATATGCctttctcctgcctctcctctcttctcccagaCAGCTAATCTACAGGCCTAGATACAGAAGCCTACCACAGAGATGGTAACCTAACCAAGCTGTCTGAGAAGGCCTGATGAGGCTTATAAAGGACATACTGTATGATTACCAGTATGATCACTACGCAAAAAGCAAACAGTCTAATGATTATTTAAATGTGAGTGGACCTTTACCTGGTAAATCTTGTTCAGGCAGTCAGAGGTTATTTAAGACACCTCATTGATTAAGCcttctttttatatatatatatattgtcactTTAGCCCACTGTTGTTGCAAAAGAAAGCTGAGAACATAATTAATAATGGGCCTGATGCTAAATGAACTCCATGGTAGGGCTCAAGCTGTATGTTCAGTGTGGAATGAACTTTACCATTGATTTACCTATTTTCAAGCTATTCAAATGTGTCGCTGCAGTGCACATATTACTTGTCAACATAGAAAAGACTCCCTTAGAAAGTCCCACAGTCCACGGTCCTGTTGTTTTGTGGTCAGAACAAGGTTTCAAAATATCACATCTGATAATGTCATTAAACCACAAACAAATACAAGTTTCTCCCGTTGTTAGGGAAGTGAGAGTTTTTGTTCCCCTCTAATAATTTTTGGACACTTTGACAGGGTAGCATACAACACAAAGGTTTGTACTCATGTGTCTGCTGTCTAGTATGAGTATAGATGAAGTCCATCACAATAAATGAATCCAACATCAACTGAAGGAATGGGGAACGTAGAatacattttcaacaacaaaaaatatacaatacagtaccagtcaaaagtttggacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2246481 lncRNA downstream 55508 23475674 ~ 23475959 (-) True G1964749
TU2246475 lncRNA downstream 89701 23441554 ~ 23441766 (-) True G1964743
TU2246474 lncRNA downstream 90228 23440953 ~ 23441239 (-) True G1964742
TU2246473 lncRNA downstream 90636 23440607 ~ 23440831 (-) True G1964741
TU2246471 lncRNA downstream 92548 23438584 ~ 23438919 (-) True G1964739
TU2246532 lncRNA upstream 20471 23569782 ~ 23575887 (-) True G1964794
TU2246552 lncRNA upstream 47707 23597018 ~ 23597227 (-) True G1964813
TU2246574 lncRNA upstream 100890 23650201 ~ 23650874 (-) True G1964835
TU2246216 lncRNA upstream 155369 23704680 ~ 23706779 (-) False G1964509
TU2246217 lncRNA upstream 155369 23704680 ~ 23706779 (-) True G1964509
XM_021585007.2 mRNA downstream 4267 23519410 ~ 23527200 (-) True LOC100136135
XM_021582983.2 mRNA downstream 22067 23502834 ~ 23509400 (-) False if5
XM_021582982.2 mRNA downstream 22068 23502834 ~ 23509399 (-) False if5
NM_001160627.1 mRNA downstream 23566 23502838 ~ 23507901 (-) True if5
XM_036962666.1 mRNA downstream 29534 23498469 ~ 23501933 (-) True LOC110505645
XM_021585015.2 mRNA upstream 39938 23589249 ~ 23592498 (-) False LOC110505650
XM_021585014.2 mRNA upstream 39938 23589249 ~ 23592525 (-) True LOC110505650
XM_036962785.1 mRNA upstream 56562 23605873 ~ 23626905 (-) True LOC110504212
LOC118944143 mRNA upstream 95822 23645133 ~ 23649017 (-) True LOC118944143
XM_036962220.1 mRNA upstream 104911 23654222 ~ 23658902 (-) False LOC110505651
TU2246459 other downstream 102823 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 308964 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 363354 23165032 ~ 23168113 (-) True G1964564
TU2245462 other downstream 485763 23036891 ~ 23045704 (-) True G1963846
TU2244298 other downstream 1434971 22095519 ~ 22096496 (-) True G1962803
TU2249876 other upstream 2986053 26535364 ~ 26538708 (-) True G1967882
TU2250152 other upstream 3167373 26716684 ~ 26765371 (-) True LOC110505716
TU2251892 other upstream 4550610 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 4594127 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 5308629 28857940 ~ 28861987 (-) True G1970606

Expression Profile