RNA id: XM_021585021.2


Basic Information

Item Value
RNA id XM_021585021.2
length 1993
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110505653
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23696473 ~ 23704474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGACCTTAAAAAAAAACCCTGTTTCTGTTACTTCCGTGTTTAGCGTTCTAGGCAGTTTTCGTTTCGGAACAGCAACATGGCGCAGCTGAAAACAAAACGTTCCTGTAAACTGTTATGTCAAACTAATTCACCTTCATGTAAATTATCATGTAGTCATCTTTTCCAACCACTCCTCTCAATAATATTAGTCAGCTCCATCGCAAGTTCTGCTgtagcagaaacagagacaggcgTCCTGACAATAACAGATGCTAACTGGACGGTCACTATGGATGGCGAGTGGATGATAAAGTTtgttgcTCCCTGGTGCCCGGCATGTGCCCAGCTGAAGGAGCAGTGGGAGAGATTCTCCAGCCTGGCAGCAGCCATGGGGGTTTCAGTAGGAGAAGTGGACGTCACTGAACAGCCTGGTCTCAGTGGACGATTTTTGGTTACCACACTGCCAACCATTTTCCAgaggtgggaggaggtggAACCACTGCCTTCATGGAAgtctcctacttctcctctGATGAGCTGCATGGCTGGACTCTTCAGGCTTTCACTGTGGATCCGGtgGACTCATGGGTATCTGACGGGAGATTTGGGCATGCCGGTGTGGGGCTCCTACCTCTCCTTTGCCATGGCAACACTTGTCACTGGGCTGCTGATGGGACTGgtgctggTCCTGGTTGCAGATTGCCTCTGTCCTTCCCGACAGaagctgaaggaggagagagcaggagtgtgtgtgagtatggCGGAGAAGAGGCAAGCGTCGGAGGCAGATGAGGGGTCTAACAAGGAGGAGCcagagacactgagacagaggagaggacaggcaaAACGTACCTCCTAACCAGTGGTTGGAACCTAAATTATTTTCCAATTgttttgttctgaacagaaccattattttttttgttacatTCCACTGTtttccgaccagcaaaataaagttctgaaccggttcgaACCAAATAAAAGTAACAGTTTATAttgttcctttctgttcctttttaaacctctgaaattgtacaaaaataaataataatttgctCAACATTAAATGACTTCACCAATCATGCAGTGCAGATAGAGCAGCTTGATATGGAGCAGACAAGCTATAGCTCAGTGAGTTGTTTACATGCAGCTGAAATTTTGCGGGTGGAGGAAGCTTGGCTTAaagcgctgggcatcttgttgtgacatgcattatctgaattaggcccacagaattatacctacggCGGAGCGGCTTCTttggaggaactttgaatgtctttgaacttctgAGATGGCTTAACATTGAACCAGaactagctatagctagctaatgagCTTGTGTGCGCAGagcggcaccagaattaaaaatacatcttacctttttgtagttaataaatacaatgtgaaatgtgataactatagtattctaactagcattgaaaaagttaatccattcttctctaattAAAAATCTCTTTCCCTATCTTCTGAATCACGCTTGTAACGTCAGTAGGTTACAGCTATGCTTCGGGgggttctgattctgttccttggaaaatgtagttattttccggttttctgttctgttccctgaaccggttccaaagGAAATGTTCCCTTCAGACAGGACGacaaagacaaaaatgtatgctgAACAAAAAGAGTGATTTGACTAATGCTTGTCGTGTGTTTTTACATgtgtgtattggggggggggggtctggaatTTTTCACTTTTCTATTTTTCGTCCACTATTGTTTTCATCCGTTTTTTATAACGTTGTCCAATTTTCTATGATTATCACAAAATAAACTTTATTTTCTTTGATTTGAAATAGTTTTATATTGTTAAGACTGCCATATGCATACATACCGTTTGAGCTAGGTGTGATTCTATTATTGATGGAAGACTATGATAATGACTGAGTGTTGTTGCCATGTGAGGAGGCCCCTCCATCCTTGATAATGGATCATTTAATCaccaaaataaacatttttatacAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245878 lncRNA upstream 100126 23595965 ~ 23596347 (+) True G1964226
TU2245856 lncRNA upstream 128791 23567466 ~ 23567682 (+) True G1964204
TU2245849 lncRNA upstream 136082 23560006 ~ 23560391 (+) True G1964197
TU2245737 lncRNA upstream 188494 23507033 ~ 23507979 (+) True G1964098
TU2245746 lncRNA upstream 190309 23505534 ~ 23506164 (+) True G1964104
TU2245947 lncRNA downstream 23983 23728457 ~ 23728696 (+) True G1964278
TU2245957 lncRNA downstream 55795 23760269 ~ 23760488 (+) True G1964288
TU2245974 lncRNA downstream 76721 23781195 ~ 23781699 (+) True G1964301
TU2245975 lncRNA downstream 77965 23782439 ~ 23782885 (+) True G1964302
TU2245976 lncRNA downstream 81894 23786368 ~ 23786579 (+) True G1964303
XR_005039538.1 mRNA upstream 177814 23508035 ~ 23518659 (+) True LOC110505647
XM_021585006.2 mRNA upstream 234306 23457658 ~ 23462167 (+) False LOC110505646
XM_036962668.1 mRNA upstream 234306 23457716 ~ 23462167 (+) False LOC110505646
XM_036962669.1 mRNA upstream 234306 23457725 ~ 23462167 (+) True LOC110505646
XM_021585003.2 mRNA upstream 275165 23409359 ~ 23421308 (+) False LOC110505643
XM_021585023.2 mRNA downstream 190 23704664 ~ 23707351 (+) True hao1
XM_021585024.2 mRNA downstream 14017 23718491 ~ 23725669 (+) False napba
XM_021585025.2 mRNA downstream 16153 23720627 ~ 23725669 (+) True napba
XM_021585027.2 mRNA downstream 33274 23737748 ~ 23746326 (+) False LOC110505657
XM_021585030.2 mRNA downstream 33274 23737748 ~ 23746326 (+) True LOC110505657
TU2245829 other upstream 82708 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 777787 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1303517 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1385672 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1421810 22268955 ~ 22274663 (+) True G1962880
TU2246198 other downstream 372047 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 655963 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 656614 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 861257 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 1084653 24789127 ~ 24791594 (+) True LOC110505697

Expression Profile