RNA id: XM_021585024.2


Basic Information

Item Value
RNA id XM_021585024.2
length 2289
RNA type mRNA
GC content 0.45
exon number 10
gene id napba
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23718491 ~ 23725669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTGAAATGTTCTCCAGATCgataggtggcggtaatgcaccaagAGGGAATCAATAGATAAAGTCATACGACCGAGGAGGACTCTCATCAGCACCATCTCTCGGAATCCATTCCCAGCTGAACGGATTCTGCGGAATATTTGTTTTTACCTTGTggacgacacacacacagcccaaacaGCGATGGATACCTCCGGAAAAGAGAAGGAGGCCATGCAGCTGATGGCCGAAGCAGACAAGAAGGTCAAGTCCTCCGGCTCGTTCTTGGGAGGGATGTTCGGGGGAAGTCACCACAAAGTAGAAGATGCATGTGAGATGTACGCCAGAGCAGCCAACATGTTCAAGATGGCCAAGAACTGGACCGctgctgGTAATGCGTTCTGTCAGGGGGCCCGGCTCCACATGCAGCTGCAGAATAAACTGGACTCAGCCACCAGCTTCGTCGACGCAGGAAACGCTTACAAGAAGGCTGATCCTCAGGAGGCTATCAACTGTATAAATGCAGCCATCGATATTTACACTGACATGGGTAGGTTTACTATCGCAGCCAAACATCACATCACCATCGCAGAGGTGTACGagtctgagctggtggacatagAGAAGGCAATCGCCCACTATGAGCAGGCAGCCGATTATTATAAAGGGGAGGAGTCCAACAGttctgcTAACAAGTGTCTGCTGAAAGTGGGCCACTACAGCGCTCAGCTGGAGCAGTATCCGAAAGCCATTGAGATCTACGAgcaggtggcCACCAATACTATGGACAACCCCCTGCTGAAGTATAATGCCAAAGAGTACTTCTTTAAAGCCTCCCTCTGTCACTTCATTGTGGACGAACTCAACGCAAagcTGGCCATAGAGAAGTATGAGGAGATGTTTCCTGCTTTTGCAGACTCAAGAGAGTGCAAGCTGCTGAAGaagTTGCTGGATGCCCATGAGGAGCAGAACTGTGAGGCGTTTACTGAAGCTGTTAAAGAGTTTGACTCCATCTCTCGTCTGGACCAATGGCTCACCACCATGCTGCTCCGTATCAAGAAGACCATCCAAGGAGATGCTGGAGATCTCAAATAAAGAGAAAAGAGGGGTGGGTTGGGGGGAGGGATACAGGagtgagggatagagaaagatatgggtagggagagaggatggagagatgaaagggatggaggagagatatAGGGTTAGGTCAGTGGTGTGAAGGGAGGCAGGTCtttatgtgtttgatgtgttcagTGTAAAGAACTCCATGACTGTAGTTCATCGTGTCTTACCATATCTCCCCTCAGACTCACACACTGTCAAAAACCTTAGCTGTTTAAACTTTACAAGTAGGAGTTACCCAGGAGTTGAAAaaccagttgacaaattattagaTACATAATAGTATaaatgtttatacaacttgatctTTTAGTTAAGTAGGGTACTCTTACACTCATGTTTTTAATGTGAATcagtacacttttttttttttttttacagtgcacACTTAACCTTCCTAACATCTCCACTGAATATCTTCCCTTGATTGGACCCTGTACAGGTTCATGTTTTAACGTGTAGGGCTATACAGATAGTGTATGTaaagatcgtgtgtgtgtgtgcattcaatGTATCACATTGAAGCCAATATATCTGTGCCCGTGCTtgttgtagttgtgtgtgtgtgtgtatatgtttgtgtgtgtatgcatgtgtgtgagcgagagagagagaaaccaaagGGAATGAACACTTGTTCTGTGGGTCATATAATGGTATGTTAATAATTCTTGTCAAATCGGAGTCCTCTGTTCTAAAAGTGTTTCTATTGATTATTCTCCTATGaaaatatgtatatatgtttGAACCCtttactttcctctcctcttgCCCCTCCCTCATATCACAATACTACTCCCTACACACTTCTCCCCTCACCCCTAGACAATCCTCCTAGCCCCTACACACTTCCCTTAACCCCTGGACCCTTATGCACTACCCCGTAGACATGTCCCCTAGCCCGCTAGACACTAGTGATCTGAAAGAAATTGGATAGGTATAAGCACACATTCAATTCTATCAGATCGACACAGGTGTTAGGAGTCAGAGGTTAGGGGAAGtgtctgtgttgtagtgtgttgctgtgttgtgcttttgtgctgtgtgtgtgttcctctcagCATGTTGCCATGGTAAtgatgtgtgtgttcagtgttatTGTCAAAAAGGTTAACTCAATGTATCACTATGTTCATTATCCCGTGCATAATGTACAAAAAAATTAAACTTCAACAAACTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245878 lncRNA upstream 122144 23595965 ~ 23596347 (+) True G1964226
TU2245856 lncRNA upstream 150809 23567466 ~ 23567682 (+) True G1964204
TU2245849 lncRNA upstream 158100 23560006 ~ 23560391 (+) True G1964197
TU2245737 lncRNA upstream 210512 23507033 ~ 23507979 (+) True G1964098
TU2245746 lncRNA upstream 212327 23505534 ~ 23506164 (+) True G1964104
TU2245947 lncRNA downstream 2788 23728457 ~ 23728696 (+) True G1964278
TU2245957 lncRNA downstream 34600 23760269 ~ 23760488 (+) True G1964288
TU2245974 lncRNA downstream 55526 23781195 ~ 23781699 (+) True G1964301
TU2245975 lncRNA downstream 56770 23782439 ~ 23782885 (+) True G1964302
TU2245976 lncRNA downstream 60699 23786368 ~ 23786579 (+) True G1964303
XM_021585023.2 mRNA upstream 11140 23704664 ~ 23707351 (+) True hao1
XM_021585021.2 mRNA upstream 14017 23696473 ~ 23704474 (+) False LOC110505653
XM_021585020.2 mRNA upstream 14017 23696474 ~ 23704474 (+) True LOC110505653
XR_005039538.1 mRNA upstream 199832 23508035 ~ 23518659 (+) True LOC110505647
XM_036962668.1 mRNA upstream 256324 23457716 ~ 23462167 (+) False LOC110505646
XM_021585027.2 mRNA downstream 12079 23737748 ~ 23746326 (+) False LOC110505657
XM_021585030.2 mRNA downstream 12079 23737748 ~ 23746326 (+) True LOC110505657
XM_036962267.1 mRNA downstream 31314 23756983 ~ 23761303 (+) True LOC110504213
XM_036962981.1 mRNA downstream 247227 23972896 ~ 23991461 (+) False LOC110505665
XM_036962980.1 mRNA downstream 247657 23973326 ~ 23991462 (+) False LOC110505665
TU2245829 other upstream 104726 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 799805 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1325535 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1407690 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1443828 22268955 ~ 22274663 (+) True G1962880
TU2246198 other downstream 350852 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 634768 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 635419 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 840062 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 1063458 24789127 ~ 24791594 (+) True LOC110505697

Expression Profile