RNA id: XM_021585030.2


Basic Information

Item Value
RNA id XM_021585030.2
length 3378
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110505657
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23737748 ~ 23746326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTGCGCACTTCCGGTGGCCGCCATATTGATTTTTTTTGTGGATGTTGATAACACACGTTCTTAAATCGTTGTTCAATTTTATGTCCAACTTTTCGTATTATTGTTCTATTGTGGTATCTGGTTATTTATTTATAGTTACTACCTGAAGGGTAGCAACACAACAGCCAAGATGCCGCGTATCATGATCAAGGGGGGTGTATGGCGAAACACCGAGgATGAAATACTGAAGGCAGCGGTGATGAAATATGGGAAGAACCAGTGGTCTCGTATTGCCTCCCTGCTGCACCGCAAGTCTGCCAAACAATGCAAGGcccgctggtgtgtgtgtgtgtgtcacgttaAACCCGGTATGAGTGGCTGGATCCCAGCATTAAGAAAACCGAGTGGtccagagaagaagaggagaagctGCTCCATCTGGCCAAGCTTATGCCCACCCAGTGGAGGACCATTGCTCCTATCATAGGACGCACCGCTGCCCAGTGTCTGGAGCACTACGAGTTTCTACTagacaAAGCAGCCCAGAGGGACAATGAGGAGGATACAGCTGATGATCCCAGGAAACTGAAGCCTGGAGAGATCGACCCCAACCCTGAAACCAAGCCCGCTAGGCCTGACCCTGTGGACATGGACGaagatgagCTGGAGATGCTGTCTGAGGCCAGAGCTCGTCTGGCCAACACTCAGGGGAAGAAAGCCAAGAGGAAGGCCAGAGAGAAACAGCTGGAGGAGGCCAGaCGACTGGCTGCTCTACAGAAGCGCAGGGAGTTGAGGGCAGCAGGCATCGACGctcagaagaagaggaagaagaagagaggagtggacTACAATGCTGAGATTCCCTTTGAGAAGAAACCTTCTCAGGGTTTCTATGACACCAGCATGGAGCTCTATGAAGGTCTGGAACCAAACTTCAAACGCCTGAGACAACAACACCTGGACGGAGAGCTACGcaatgagaaggaggagagggagaggaagagggatagaCAGAAGATCAAGAAGAAGAAGGAAAGTGATCTTCCGTCAGCCATCCTCCAGACCAGCGGAGTAGCAGAGTTCACCAAGAAACGCAGCAAACTGGTGCTGCCTGCACCACAGATCTCTGATGCGGAGCTGGAGGAGGTGGTTAAGCTGGGTCAGGCCAGTGAAGTGGCTCGTCAGACCGCTGAGGAATCTGGGATCACTAACTCCGCCTCCTCAGCCCTACTGTCAGAATACAGCCTTTCCAACAGCGCCATGACAACTGGGCTACGCACCCCCAAGACCCCTGCCGCGCAGGACAAGATACTACAGgaggcCCAGAACCTGATGGCTCTAACTAACGTAGACACTCCTCTGAAAGGAGGTCTGAACACTCCTCTCCACCAGAGTGACTTCTCAGGAGTCACACCCCAAAGACAGGCAGTACAGACACCAAATACTGTACTGACCACACctttcagAACCCCGGGTCCAGGGTCTGAGGGCGGTATGACCCCCCAGGGAGCGTTAACCCCTAAAGGACCGGGTACTGTGACCCCCGGAGTAACCCCTGGGCGCACCCCTCTACGAGACAAACTCAACATCAATAGTGAGGAACAACTAGCAGACCCTGCCTACGCTAGACATCTGCAACGAGAGTCGAGGGAGCAGCTGAAGCTGGGTCTGATGTCGCTGCCGATCCCCAAGAACGACTTTGAGATCGTTCTACCAGAAAACGCAGAGACTGAACTGGAGGAAATGGAGACTGAGACCGGATACATGGAGGACGCCTCAGAGATAGAGCTACGCAATCAGgctgCCCGGGATGCAGAGCAGGAGAAAGAGCTGAAGCTGAGACACACTGCTGTACAGAGGATTCTACCCAGACCATCAGAGGTGAATGAGTCTATCCTGCGTCCGTTGGGAACAGATCCTCTGTCAGAACTGCAGCAGGCTGAGGAGATTATCAAGAAGGAGATGATCACTATGCTGCACTTTGACTGTCTACACCACCCACCAGCCAACCAACAGCGCAGCAAACAACGAGGGCCTGCCTCCACCTCCAACAACGCAGAACACATCGCCCACCTGGACAGACACCCCTACAAGCCAATCAGCAATGAGGAGCTGGCacatGCCAGTGAGTTGCTGAGCCAGGAGATGGAGGTGGTGAGGGCAGGTATGGGTCACGGGGACCTGTCCATGGAGGCCTACAGCCAGGTGTGGGAGGAGTGTTACGGCCAGGTGCTGTACCTCTCCGCCCAGAGCCGCTACACCAGGGCCAACCTGGCCTCCAAGAAGGACCGCATAGACTCCCTGGAGAAGAAATTAGAGATCAACCGAGGCCACATGACGTGTGAGGCCCGTCGCGCTGCTCGTCTGGAGCGTCGTCTCAAGgtGTTACTAGGAGGGTACCAGTCCCGTGCTGTAGGTCTACTGAAGCAGCATGGTGAACTGTGGGAGCAGGTTGAGCAGGCAGCTACGGAGCTCCACACCTTCACTGAGCTGAAGAAACAAGAAGACACAGCGATACCCCGCAGACAAGAGGCTCTAAGGGAGGACGtggagagacagcaggagagagaaaaggagcttCAGCAGAGATATGGAGACTTGCTGCTGGAGAAAGAAGCTCTGCTGTCTGCTAAATACTAACACACCCCTACTAGAAACCCCATATATGctttctatacacacacacacacacacacacacacacacacacataaatcacTAACACATATTATAAAAACATGTTAAGCAAATGCACACATACTGGAGAAAGTGTCTGCTCAAACACAGGATCATAGCAACCCTCGTCTTGCCCTCTAATTGTGTGTTGATAGGTAAACATATTTACAAGTGAATGATCTATTGGAGTTCTGCCTCTTCATGTCATATTGATGTCATGGTCCAGTGCTTAGAGCATGCCTAGTGTTGGTCTTTCCTCTGGTGAATCAGTGTCTTTTCAAATTATCAATACAAATCTGATTTCTCCCTAAGACCTGTTTGCTATATGTGGTGTTTGTCTGGCCCTAGGATTTTCTACCTGCAGCAAACCTAGTGGATAATGCTGGAAATACCAGGAAAAGCAAAGTGCCTCTCAAAGCATGGCCTATGAAATGTATAGAGGAACTTGTTCTTAGCAGTGTTGTCAGGGCTATTGGATGATAATCTGTTTTCCTACAGTTCACATAAGTGTTGGAAGATGCCCTATTGACAGAAAGCTAACTTTCCATCCAATTGCtgagattttcatgcaaatattctggaATCAGCACatttttcccaccagtggtgtttcctCCAAATGGACTTgttgcagattttttttaaatagtgctTGATGACACAATGTACTTTTTTATTTAAGTTttcatgtacagaataaaaatctaaatttaaATGTTT

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2245947 lncRNA upstream 9052 23728457 ~ 23728696 (+) True G1964278
TU2245878 lncRNA upstream 141401 23595965 ~ 23596347 (+) True G1964226
TU2245856 lncRNA upstream 170066 23567466 ~ 23567682 (+) True G1964204
TU2245849 lncRNA upstream 177357 23560006 ~ 23560391 (+) True G1964197
TU2245737 lncRNA upstream 229769 23507033 ~ 23507979 (+) True G1964098
TU2245957 lncRNA downstream 13943 23760269 ~ 23760488 (+) True G1964288
TU2245974 lncRNA downstream 34869 23781195 ~ 23781699 (+) True G1964301
TU2245975 lncRNA downstream 36113 23782439 ~ 23782885 (+) True G1964302
TU2245976 lncRNA downstream 40042 23786368 ~ 23786579 (+) True G1964303
TU2245959 lncRNA downstream 41032 23787358 ~ 23791749 (+) True G1964290
XM_021585024.2 mRNA upstream 12079 23718491 ~ 23725669 (+) False napba
XM_021585025.2 mRNA upstream 12079 23720627 ~ 23725669 (+) True napba
XM_021585023.2 mRNA upstream 30397 23704664 ~ 23707351 (+) True hao1
XM_021585021.2 mRNA upstream 33274 23696473 ~ 23704474 (+) False LOC110505653
XM_036962267.1 mRNA downstream 10657 23756983 ~ 23761303 (+) True LOC110504213
XM_036962981.1 mRNA downstream 226570 23972896 ~ 23991461 (+) False LOC110505665
XM_036962980.1 mRNA downstream 227000 23973326 ~ 23991462 (+) False LOC110505665
XM_036962982.1 mRNA downstream 227003 23973329 ~ 23991462 (+) True LOC110505665
XM_021585049.2 mRNA downstream 286556 24032882 ~ 24058913 (+) False enpep
TU2245829 other upstream 123983 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 819062 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1344792 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1426947 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1463085 22268955 ~ 22274663 (+) True G1962880
TU2246198 other downstream 330195 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 614111 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 614762 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 819405 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 1042801 24789127 ~ 24791594 (+) True LOC110505697

Expression Profile