RNA id: XM_036962981.1


Basic Information

Item Value
RNA id XM_036962981.1
length 2492
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110505665
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23972896 ~ 23991462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caGTTTCGTTTTGCAACGAAAGCGATAGTTTCTTTTGAATGAATTCAGGTAGCTCCCTCCCGGGTTCGTTCCGTTTGGTTCtatttggttcctagtgaatccACCCCGTTCAACGTGACAGGTCCTCTTTGGGcatagGCAGCGCTCGCGAGGTTCTCTCCAGCTGACAGATCGTCCAGTCCACTCCCCAGTCTCCACCCCTCCAGACTGCAGGCATGGCGGCTATCGAGGCTCGGGAATGCGAAACTGAAGGCTGTAGCAGCAAGGCCAAACTTCAATGTCCAACCTGCATCAAGCTCGGGATCCAAGGCTCATACTTCTGCTCTCAGGAGTGCTTCAAAGGGAGCTGGGCCACTCACAAGCAGCTGCACAAAAAAGCAAAGGAGGATAACCAGGATGAGGCAAAGAACTGCGTGGAGACCGACACCAACACAGACCCATGGCCTGGCTACCGCTACACGGGCAGACTACGCCCTCACTACCCACTCACTCCGATGAGGACTGTCCCCAGTGACATCCAAAGACCTGACTATGCTGATCATCCACTAGCAGCAGAAGTGGGTCTTATGGCAGgcatGTCTGAGTCGGAGCAGTCTTTGAAGGGCACTTCACAGATCAAGATCCTTCCTGCCGAAGACATTGAAGGCATGAGAGTTGTGTCTACGCTGGCCCGAGAGGTGCTTGACATTGCCGCCCTGATGGTGAAACCTGGCATGACCACGGAAGAGATTGACCACACTGTGCACCTGGCCTGCACAGCCAGAAACTGTTACCCCTCCCCTCTCAACTACTACAACTTTCCCAAGTCCTGCTGCACGTCAGTCAATGAGGTCATCTGCCACGGCATCCCAGACAGGAGACGTCTGGTGGATGGGGATATCCTCAACGTGGATATTACTGTGTACCACAATGGATTCCACGGAGATCTCAACGAGACCTTCTTTGTCGGAGAGGCAGATGAAGGGGCGAAAAAGCTTGTCCAGACCACCTTTGAATGCCTTATGCAAGCCATCGACTCAGTAAAGCCTGGTATCCGCTACAGGGAGCTCGGTAACATCATCCAGAAACATGCCCAGGCTAACGGCTTCTCTGTGGTGCGGAGCTACTGTGGCCATGGCATCCACAAACTGTTCCACACTGCTCCTAACGTGCCCCACTATGCCAAAAACAAAGCGGTCGGAGTGATGAAACCTGGCCATGTATTCACCATCGAGCCCATGATCTGTGAAGGTGGTTGGCAGGACGAGACGTGGCCTGATGGCTGGACAGCTGTGACTCGGGATGGGAAGCGTTCCGCCCAGTTTGAGCACACCTTGCTTGTGACGGAGACGGGCTGTGACATTCTGACACGCCGGCTGGACGACAACGGGCGTCCCCACTTCCTCAACCAAATCTAAATGGGGGGAGGGATACAGCAACGAAATGACTGTCTCGTGTGCAGCTCACTTTGATCCCCAATGTCATATCACACATACACGCCTCTAACCTGAGGCACGCCGCccgcctgcccccccccccccccccggaggcTGTCCCTGCCGCGGCCTGGCTCTCACCGTTCCACGAATTTAGTGTTGTTCTCCAAGATTTACGGGAAGTACTTGAATACATCTGATATCAACTGTGTGGATTGTTTTAATGAggctgttttaaaaaataaatgtctcATCAGGAGAtgaaaagtaaaaataaagaagtgTATTTATGCGCAGTAGCAGGTTTAATTTTTACCTTGATTGTGAGCTTTGATTCTGTTGACATATTTGACTGCAGAGGTGTGGAAAGGGTCATGCTTCAGTTTGACTCCTTGACCTCTAGACATGTGCCACCTTACTGTGTTGCCTAATTGACAGCAAGGCAGCTGGGTCCGAGAGGACTGGCCAGAGAGGCCAGAGAGGGGAGCTGTTGAGCTCAGTGTTCTGCTAAAGTGTGTAGTGCAGGTCTATTCAAACCTGGGTCCTGAGGTCTGCAGCACTGCTggttttcttttctctctctctctagtgaactAGTTGATTTAGGTTCATTGATTGACCAGAATCTCCTTGCCAGGTCTGGTTTGAATCGGGAGGAAAGCCTGCAGTGCGGTGGACCCCAAGGTCTGGATTAGAATTGCCCTGGTGTAGCGCGTTGAGCCTTAATCTGTGTGAATTAAGAATAACCATGCCAGATAATGTCTAGGCAGCATGTCTGTTATTCCTCAATCCAGTCAATCAATATTTACCTTGATATACTGTTGAGCAACACTCTTGAGTCTCCATTTTAATCCAATCTTTCCAGTTTCTCTGCCAGCTTTTTATTTCTTCTATGATGGGAGTAATAAACAGCTGttctgtagttgtgtgtgtgtgtgcgtatatgcTTTTGTGTTTGAGTGTGGTGAGGACTGTATAAATGCCAAAGGCTCTATTGCAGCAGAAGTCTGGGTTTACTACAGACCTGTGAATTAATACCCTTTTTCAGAGTACTGTATTAAAATAGTAATAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2246075 lncRNA upstream 9228 23892004 ~ 23963668 (+) True G1964385
TU2246065 lncRNA upstream 20951 23883282 ~ 23951945 (+) True G1964377
TU2245983 lncRNA upstream 167676 23804484 ~ 23805220 (+) True G1964309
TU2245959 lncRNA upstream 181147 23787358 ~ 23791749 (+) True G1964290
TU2245976 lncRNA upstream 186317 23786368 ~ 23786579 (+) True G1964303
TU2246139 lncRNA downstream 1868 23993329 ~ 23993603 (+) True G1964442
TU2246140 lncRNA downstream 2544 23994005 ~ 23994253 (+) True G1964443
TU2246142 lncRNA downstream 3690 23995151 ~ 23995555 (+) True G1964445
TU2246165 lncRNA downstream 28466 24019927 ~ 24020152 (+) True G1964467
TU2246166 lncRNA downstream 28780 24020241 ~ 24020560 (+) True G1964468
XM_036962267.1 mRNA upstream 211593 23756983 ~ 23761303 (+) True LOC110504213
XM_021585027.2 mRNA upstream 226570 23737748 ~ 23746326 (+) False LOC110505657
XM_021585030.2 mRNA upstream 226570 23737748 ~ 23746326 (+) True LOC110505657
XM_021585024.2 mRNA upstream 247227 23718491 ~ 23725669 (+) False napba
XM_021585025.2 mRNA upstream 247227 23720627 ~ 23725669 (+) True napba
XM_021585049.2 mRNA downstream 41421 24032882 ~ 24058913 (+) False enpep
XM_021585050.2 mRNA downstream 41421 24032882 ~ 24058913 (+) True enpep
XM_021585053.2 mRNA downstream 87260 24078721 ~ 24080745 (+) True LOC110505673
XM_021585057.2 mRNA downstream 243817 24235278 ~ 24289662 (+) True LOC110505676
XM_036962432.1 mRNA downstream 322013 24313474 ~ 24355303 (+) False LOC110505678
TU2245829 other upstream 359131 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 1054210 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1579940 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1662095 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1698233 22268955 ~ 22274663 (+) True G1962880
TU2246198 other downstream 85060 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 368976 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 369627 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 574270 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 797666 24789127 ~ 24791594 (+) True LOC110505697

Expression Profile