RNA id: XM_021585049.2


Basic Information

Item Value
RNA id XM_021585049.2
length 3619
RNA type mRNA
GC content 0.50
exon number 20
gene id enpep
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24032882 ~ 24058913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCTAGTGTATAAGGCTTGCCTCCAGTGTGTGGGAGTCCTTCTCTCTGTTGTGTTGTAGACTCCCCCTCCGCAACCCTCTTCACCACTCCAGTtaacctctctccacctcccacaGGCTGCCCTGCGCTcggtgacaggcagacagagcttGGATCAACTCAGACCAATAGTTTTTCCTCTTAGATATGCTTGAACTCTAGGGTCCTCTTATCAAGTTCTCCAAGAAACTGATCTGCAGTCAGTTTTAAATCAGTTTGGCTTTGTGCTCTGCTTCTGCTGCAACCCACTGGAAATCTGATCTGGAAACAGCTGTTTTCTCCCACATTATTCCTCCTGTAGGGGATTCAGAGGATATCTGAGATCACAGCGTATGGTCTTACACCACCAAGCCGGGCACCATGGTTGAAAGCATGGACTTTGAAAAGGAGGAGAAGCGCTACTCCATCCGCGGAAAGCATGTGGCCCTCATCTGTGCGGTAGTGGTGGTGTCAGCCATTGCTGTTGGGCTGGGGGTGGGCCTCACGCGGCCGGACAGTACCCTGGCTGACCCGGCCCCCACAGAGGAAACCCCCAAGCCCACCCCCCCACCAGCTGACAGGGGGCCCTGCAAACCCTCCAACAACACTGACGGGGACTGGAAGAATTTCCGGCTGCCAGACTACGTGAAGCCAGTGCATTATGATCTCCATCTGGAGCCTGACCTGACCACTGACCTCTACACGGGGAGCGTGTCCGTGCACCTGGAGGTGAGCCGACCCACGAGGCACCTGTGGCTCCACATCCGAGAGACGTTCATCAGTGCAGTCCCCAGGCTCGTCCTGAAAACCCCACAGGCTCAGAGGGAGGTCACCGTGGCCATCAAGGGTTGCTTTGAGTTCAAACCACAGGAGTATGTGGTAGTCGAAGCGGCAGAGGAGCTTGTGGCCACCAAGCTCAGTGAGGTGTACGTTCTCAGCCTGGACTTTCAAGGCTGGCTCAATGGATCTCTGGTGGGCTTCTACAGAGTCACCTACACAGAGAACGGAGCCATCAAAAAAATTGCTGCCACCGACCATGAGCCAACAGACGCCCGCAAATCTTTCCCCTGTTTTGATGAGCCGAACAAAAAGGCCACTTACAATATTTCCATCACCCATGACAAGGACTATGGAGCCCTCGCCAATATGCCAATGGAGGGCACCCCAGAAATGCTTCCTGGCAATAAGATCAAAACGTTCTTTCAGAGGTCCGTTCCAATGAGTACCTATTTGGTATGTTTTGCTGTGCACCAGTTCACGTTTGTGGAAAGGAACTCGTCCCGAGGAATTCCTTTGCGAATCTATGCACAGCCTGCACAAATCAGGACTGCGGAGTATGCAGCGGACACGACAAAGGTTATTTTTGACTACTTTGAGGAATATTTCAACATGAATTACTCCATCCCAAAGCTAGATAAGATTGCCATCCCTGACTTTGGCACGGGGGCCATGGAGAACTGGGGTCTGATCACCTACAGGGAGGCCAACCTCCTCTATGATGAGAACCAGTCCTCGTCGTACAACAAACAACGTGTGGCCAGTGTCATCGCTCATGAGCTGGTCCACCAGTGGTTTGGAAACATTGTGACCATGGATTGGTGGGATGACCTTTGGCTAAATGAGGGCTTTGCCAGTTTCTTTGAGTACATCGGTGTAGAGAAGGCTGAGCCTCTCTGGGGAATGCGTGACATCATGATCATCAGTGATGTACTACCTGTCATGGTGGACGACGCCCTCGTCACCTCCCATCCAATCATTGTGGATGTGTCAACTCCGGCTGAGATTACCTCTGTGTTTGATGGTATATCCTACAACAAGGGGGCATCAATTCTCAGGATGGTGGAGGACTGGTTGGGTCGAGACAACTTCCGAGATGGTTGTCGGAAATACTTGAAAGATTTCCATTTTCAGAATGCCAAAACAGCCAACTTCTGGGCATCCCTTGCTAACGTGAGTGGGTTGCCTGTGGCAGATGTGATGGACACATGGACCAAACAGATGGGCTACCCGGTATTGGACCTGTCTACTGCCGGTACTCAGACCAAACTCACCCAGCGCAGATTCCTGTTGGACCCCAATGCTGATACCACCCAGCCACCCTCACCACTCAGCTACAAGTGGACCATCCCTGTTAAGTGGCACTCAGTGGATAGTAATAAGAATATGTCCATCATGTTCAACAAGTCCAGTCCAGAGCAAGTCTTAGCTGACTATTTCCCTGCAACGGATGGACTCCTGAAGATCAATAACGACCATATTGGATTCTACAGAGTCAATCACCATGACAGCATGTGGCGCACCATTAGTCAACAGCTTCAAACAAATCACAAGGAGTTTGACGCTGCTGACCGATGCAGTTACATAGATGATGTCTTTGCTCTGGGAAGGGCAGATGTTGTCGATTATGGAAATGCATTCAACCTGACAAAATACCTGACCAATGAGACTGAGTACATCGTCTGGGAACGTGTGTCTTCTTCCATTGCCTATGTGCGAGACATGTTGTCTGACGACACTGTTCTTTACCCTAAATTCCAGAAATTATTCCGTGAGCATGTGCAGACTATCTCCAGGCAGCTGGGATGGGACGACAAgggaagccagagagagagGCTGTTGCGTGAGACAGTCCAGGGAATTGCTTGCCAAATGGGCGACCAGGAAGTGCTAAATGAGACATCTGTTTTATTTGACCAATGGATCTCAGGAAACATCAGCAGTGTTGGGGTGAACCTGCGCCTGTTGGTGTATCGCTATGGCATGAGGAACTCAGGCACTGAGGCGAAGTGGAACTTAATGTTTGAGAGGTACAAAACAGAGACCTTGGCCCAAGAGAAGGACAAGCTCCTGTATGGATTGGCATCCGTGGAGAACATCACTCTTCTGTTCAaCTTACTGGAGATGTCCAAAGATGAGAGTATTGTGAGGACTCAGGATTTGTTCACTGTGGTCCAATATGTCTCTCTGAATCGCTACGGCAAGACCATGGCCTGGGACTGGGTCACCCTCAACTGGGACTACCTAGCGAACAGataCACTGTCAATGACAGGAGCCTGGGGCGCCTGCTGACCAGAATCAGCACCACCTACAATACAGAGCTACAGCTGTGGCAGATGGCACACTTTTTCAAGCTGAACCCTAATGCCGGGGCTGGGGAGATGCCTAGGCAGCAAGCTCTAGAGACAGTGAAGAACAACATCGAGTGGGTCAGGAGAAACAAGGCAGAGATCAGCTCTTGGCTGGAGAGCAACGTCGCCTACTGATGACCTCAGGTCAACAAGACTAAAGAACCCATGCCTAATCCAAATATAAAACCTTCATGCTGTTTCCATTCATAAATTAATTCAACGGCAGTGCAAGCACACCACAGGACTGCCTTTCTAAATCAAGTATCAAGTCCCTATGTCCTGCATATGCTGCTGTGCAAATCAAACACACTTTTGATGTGATTGTAACTCAGTGAGTCGCTTTCTCTTTACTCAAGTGGAATCCATTTACAGTACTTAGTACCTTTCCTGCATTACCTATGGTATATTTGTGTTAAATTAAGGACAAATAAAATTTAAggacaaataaaataaacattttgacatACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2246166 lncRNA upstream 12322 24020241 ~ 24020560 (+) True G1964468
TU2246165 lncRNA upstream 12730 24019927 ~ 24020152 (+) True G1964467
TU2246142 lncRNA upstream 37327 23995151 ~ 23995555 (+) True G1964445
TU2246140 lncRNA upstream 38629 23994005 ~ 23994253 (+) True G1964443
TU2246139 lncRNA upstream 39279 23993329 ~ 23993603 (+) True G1964442
TU2246200 lncRNA downstream 28353 24087266 ~ 24087467 (+) True G1964501
TU2246917 lncRNA downstream 138078 24196991 ~ 24197208 (+) True G1965150
TU2246921 lncRNA downstream 140402 24199315 ~ 24199618 (+) True G1965154
TU2246927 lncRNA downstream 144373 24203286 ~ 24203490 (+) True G1965160
TU2246936 lncRNA downstream 150050 24208963 ~ 24209294 (+) True G1965169
XM_036962980.1 mRNA upstream 41420 23973326 ~ 23991462 (+) False LOC110505665
XM_036962982.1 mRNA upstream 41420 23973329 ~ 23991462 (+) True LOC110505665
XM_036962981.1 mRNA upstream 41421 23972896 ~ 23991461 (+) False LOC110505665
XM_036962267.1 mRNA upstream 271579 23756983 ~ 23761303 (+) True LOC110504213
XM_021585027.2 mRNA upstream 286556 23737748 ~ 23746326 (+) False LOC110505657
XM_021585053.2 mRNA downstream 19808 24078721 ~ 24080745 (+) True LOC110505673
XM_021585057.2 mRNA downstream 176365 24235278 ~ 24289662 (+) True LOC110505676
XM_036962432.1 mRNA downstream 254561 24313474 ~ 24355303 (+) False LOC110505678
XM_021585064.2 mRNA downstream 257899 24316812 ~ 24355303 (+) False LOC110505678
XM_021585062.2 mRNA downstream 257900 24316813 ~ 24355303 (+) False LOC110505678
TU2245829 other upstream 419117 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 1114196 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1639926 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 1722081 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 1758219 22268955 ~ 22274663 (+) True G1962880
TU2246198 other downstream 17608 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 301524 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 302175 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 506818 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 730214 24789127 ~ 24791594 (+) True LOC110505697

Expression Profile