RNA id: XM_021585065.2


Basic Information

Item Value
RNA id XM_021585065.2
length 4959
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110505678
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24313474 ~ 24355303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgagaggagtggtgagTAGTAGATATTTACCAGTACAGAGgattggatttttagcatttataccaatggttatcaactgtactgcagggatggaacatAAGTCGCAGAAAATTAAGGTTGTGGTgacagctgcagagaggtatttgggtgtaCAAGACTTTAAGTCAGAaaagttacagggtgtgttgactGGTGGTGTCCCCTCCTTTCAGGctgttggcctgaggtaggactagatatatttaaatagtggagtagggtggtgtgtttttagtgagtgtagggttagatggtatacatttgtattattattttattgtgtttattGTTTCAAGAAAAGTATAAGCGagttatactccagtctagtaggtggcggtaatgcaatatttattggatgccaaccccCGTTAAACCTAATCGAAGAAGTGATTAACACAGTCTATTTCATTACAGTAACATCGTTAGGCAGgcctgaaataaataataaaaaaatgttaCTGAATGAACCTCTTGTGGGTAGTGGCGTTCAGCTCGTCTTTTTATACCCTGGAACAGCACTCTTATCTCGTGATTCATGATGCTGCGCAAGTGATGTTGAAATATATTCGCGCAAGTATGAGTAGGCCTGCTTTATCTAATGTAAATTCTCAAAACAGGTAATGTGATGTGACCACTACAGATTGTATTTGTGTTTTGTTTTACGACTCACAGCTCTCTGCCCTCAGCACAGCGAACAATGAATACTACAGGAAAAACAGCACTGTAAGCAGCCCTAAGGCAACAGAAGACCAGGTCTGGCCACCCAGGCCCAGGGAGGGTGCAGGGTTCTGGGTGTAGGGTGCCCTGGCCACTGGGCCTATGGAGCAGATCCACTGGGTGAGACGCCGCTGGCAGCAGCTGGTTGCCGCAGATTCAGGTCGAGGCCAGTACTCGGCCCCTACAGCCCTACCCACCAAGAGTTCCCCAGTGCTCCACAACACACAGCTGCTCACTGGCAAACGGAGGACGGTCATCGCCCGGCACGGACGCCACCAGCAAGAATACCACAGCATCTCCAAGGGATGCCAGGGCAACAGCATCCGCACCACCAAGTACAGCCTTCTGAGCTTCATTCCCATGAACCTGTTCCAGCAATTCCACAGGAAACAGCAGATGTATGTGGACCAGCGTTGGCAGGACGTCCATGTGGGGGACTTTGTCCGTCTGTCCTGTAATGAGATCATCCCTGCAGACATGCTGCTGCTATACTCCTCTGACCCCCACGGCGTCTGCTACATCGAGACGGCCAACCTGGACGGGGAGACCAACCTCAAACAGAGACAAGTGGTCAGAGATCTGCCACGACAGGGTTCTGAGTTGACTCCAGAGAACTTCCACAGCCGCATTGAATGTGAGAACCCCAACAACGACCTCAGCCGGTTCCGAGGTTTCATGGAGTACCCCAGTAAGGCTCGTGTGGGCTTACACAACAACAACCTCCTTCTGCGAAGCTGCACCATCCGCAACACGGAGACCGTCATAGGCATTGTGGTCTATGCAGGTCACGAGACCAAAGCCATGAAGAACAACAATGGACCGAGGTATAAACGCAGTAAATTGGAGCGCAGGCTGAACGTGGACGTGCTGTGGAGCGTTGTCCTGCTGGTCATCATGTGTCTGACTGCAGCTATAGGCCATGGTCTCTGGCTCAGGAACCTGAAGGACACTTCCTTTCTGATCCCTGATACCACGTCTCCTGCCCTGTCTGGCTTCTACCTGTTCTGGACCATGATCATAGTTTTACAGGTGCTCATCCCCATCTCCCTGTATGTGTCCATCGAGATCGTCAAACTGTGTCAAATCTTCTTCATCCAGAACGACGTGGACTTCTATAATGAGTATATGGACTCCAGGATCCAGTGTCGGGCCCTGAACATCACAGAGGACCTGGGTCAGATTCAGTATGTGTTTTCAGACAAGACTGGCACGCTGACAGAGAACAAGATGGTGTTCAGGCGCTGCACCATTGCTGGGGTGGAGTACCCCCACGAGGAAAATGCGAGGAGGCTTGAAGTGTACGAGGAGGATGAGGCGATGGGTTGCTCCCATACGCTCAAGTCACGTGCCAGCGCCAAGTCCCTGAGCTGCAAGTCACTCAGCTGCAACCGCAGCTCTGTGTCcctgcacacactgacaggcCACTCTGAGGGGGAGGAGTCACCCAGCCCCACCCTGCCCCGACACAGCGCCTTCAGTAGCCCCATGGAGAAGGATATAGTCCCAGACCCTTTCCTGGTTCAGAAGCTGaactgtctgtcctctccactcTTCCTTCTGAGGGACGCCAGTATGGAGCTCACCTACATCGTTGACTTCTTCATGGCTCTGGCCATCTGCAACACGGTAGTGGTGTCTTCTCCCAACCAGCCCCGCCATGTGGTCGAGGTGCCTGAGGTCTCCCGTACCCCCCTTAAATCCCTGGAGGACATCAAGATGCTGTTCCAGCGTTTTGGCCTCCCCCGCTTCTCCACACTCTCTTCTCCCCACACTACAGAGAGTCCTCGCAGCTTCACACGCAGGCTCTTTTCCAGGGGCAAAGCAGCCTCCTTCACCCCCAGCCCCTCCCCTACCCCCACCAAGCTGGGTACAGAGCCAGATGGGGAGCCTAACCTTGAGGCCTCCATCCTAAGTATCAGACCAGGGCTGGATGGGGTCCCTGGAGAGGATGGGGACCAAGggtatgaggaggagggagagcgtGGCTCTTGGAAAGGTGAAGAGGACAAGATGTTACACCTCAACCCGGGGGCCTGGAGCGGGCTGGAAAACTCAAACGGAGGCGAAGGCCCTCCCAGTGAACCTAGGGCAGATGAACTGATCTACGAGGCGGAGAGCCCTGACGAGGCGGCTCTGGTCCACGCGGCCAGGGCCTACCGCTGCACCCTGCAGGGACGCTCACTCGAGCGCCTTCTGGTGGAGCTGCCAGGGATGGGCAGCCTGGCTGTGCGCCTGCTCCATATCCTGCCCTTCGACTCCAGTCGCAAGAGGATGTCTGTGGTGGTCCGCCACCCGCTCACCAACCAGGTGGTGGTCTACACCAAGGGAGCCGACTCGGTCATCATGGACCTGGCAGAGTCACCTAAAGGTGCTGAGCAGTCAGACGGGAGACAGGGTCACATCAGAGAACAAACCCAGAAACACCTAGACAACTACGCCAGGGAAGGCCTTCGCACCCTCTGCATCGCTAAGAAGgtgttggaggaggaggagtatgaAATTTGGTTGAAGCGTCATGCATTTGCAGAGACCAgtatagagaacagagaggagcttCTACTGGAGTCTGCACAGAGACTGGAAACCAACCTCACGCTACTGGGGGCAACAGGGATTGTGGATAGACTGCAGGAAGAGGTGCCAGAGACCATTGAGGCACTACAGAGAGCAGGGGTCAAAGTATGGGTCCTCACAGGGGACAAACAAGAGACTGCCATAAATATCGCCTGTGCCTGCAAACTGCTTAGGACCACAGACCAACTGCTGACTGCTAACTGTGATAGCAAGGAGGCCTGCAAGGCCTTGTTGCTGGAGCTGCGGGCGGAGGTAGAGCGTGGCGAGGCAGCTGAGGGCACGTCAGGCTTCACCCTGGTGGTGGACGGGCGCACACTGGACTTCGCCCTGCAGGAGGACCTGAAAGGGGACTTCCTGGAGCTGAGCCGGCGCTGCAGGGCCGTGGTCTGCTGCCGCTCCACTCCACTTCAGAAGAGCCATGTGGTACAACTGGTACGGGACCAGCTCCGAGTCATGACCCTCGCCATAGGTGATGGCGCCAATGATGTCAGTATGATCCAGGTGGCAGATGTTGGCATTGGGATATCTGGCCAGGAGGGCATGCAGGCTGTGATGTCCAGTGACTTTGCCATCTCCAGGTTTAAACACCTCCGCAAGCTACTGTTGGTCCATGGCCACTGGTGCTACACACGCCTGGCCAACATGATTCTCTACTTCTTCTACAAGAATGTGatgtatgTGAATCTTCTGTTCTGGTACCAGTTCTTCTGTGGTTTCTCGGGGAGCGTCATGACCAACTCCTGGGTGCTCATCTTCTTCAACCTCCTCTTCACCTCCGCCCCTCCCCTTCTCTACGGGATCCTGGACAAAGACGTGTCTGCAGATACCCTCATTAAGTTACCGGAGCTCTACAAATCCGGACAGAATTCCAAGGCGTACCTCCCTTCTACCTTCTGGCTGACGATGCTGGACGCTCTTTACCAAAGCCTTGTCTGTTTCTTCATTCCTTACTTTGCATATGCAGGGTCAGATGCAGACATGCTCTCCTTTGGGTCTCCCATCAACGCCTCGGCCCTCCTCATCATCCTACTACACCAGGTCATCGAGAGCCGCACACTGACATGGCTACATGTGTTAGTGCTGGTGGGTAGTGCTCTCTTCTACTTCTCTTTCACCCTGGTcttcagtgtggtgtgtgtgacgtGTAGTCCCCCCACCAATCCCCTTGGTGTGGACAAGCTACAGATGTCCCAACCACTCTTCTATGGAGTATGTGCCCTCACCACCGTGCTGGCACTGCTACCAAGATTCCTGTTCCATGCATTGCGCAACAGCATCTCCCCCTCTGACACACTGAAAGCTGCTCTGATGGACCAGCTCAACCCAGACAACTACTGTAGGAGGATGCAGCACTGGAACCAGACCCAGGCCCAGAGTAAAGCCAGGGGTCTCATCATCAATGTGGAAGACTTGGACATCAAGATCCCTGACTTTATACTCCCTAAAGAGCTGAAGGAATGCAGAGCTGCCACTGGCTCTGTGCTCTCCTGACCTCAGAGGCTACAGGAGGTGGCTACAATAGAAAGAAAAGAATAGTCCCCATTCAAGTCATTGATGGCATAATTGGTAGCCATTGTGAGTGTACTCTTAGGAGCAAAGAAGGAAGTAAAAGCTGGAAGTGTACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2247012 lncRNA upstream 17107 24297964 ~ 24299706 (+) True G1965239
TU2247009 lncRNA upstream 33304 24282948 ~ 24283509 (+) True G1965236
TU2246980 lncRNA upstream 69464 24245634 ~ 24247349 (+) True G1965207
TU2246940 lncRNA upstream 103676 24212929 ~ 24213137 (+) True G1965173
TU2246936 lncRNA upstream 107519 24208963 ~ 24209294 (+) True G1965169
TU2247046 lncRNA downstream 6390 24361693 ~ 24362029 (+) True G1965264
TU2247047 lncRNA downstream 7787 24363090 ~ 24363296 (+) True G1965265
TU2247048 lncRNA downstream 8027 24363330 ~ 24363556 (+) True G1965266
TU2247053 lncRNA downstream 24648 24379951 ~ 24380158 (+) True G1965271
TU2247055 lncRNA downstream 25860 24381163 ~ 24381470 (+) True G1965273
XM_021585057.2 mRNA upstream 27151 24235278 ~ 24289662 (+) True LOC110505676
XM_021585053.2 mRNA upstream 236068 24078721 ~ 24080745 (+) True LOC110505673
XM_021585049.2 mRNA upstream 257900 24032882 ~ 24058913 (+) False enpep
XM_021585050.2 mRNA upstream 257900 24032882 ~ 24058913 (+) True enpep
XM_036962982.1 mRNA upstream 325351 23973329 ~ 23991462 (+) True LOC110505665
XM_021585066.2 mRNA downstream 20524 24375827 ~ 24378263 (+) False zgc:123321
XM_036963017.1 mRNA downstream 21167 24376470 ~ 24378263 (+) True zgc:123321
XM_021585067.2 mRNA downstream 29836 24385139 ~ 24391050 (+) True utp25
XM_021585070.2 mRNA downstream 92310 24447613 ~ 24449656 (+) True LOC110505684
XM_021585080.2 mRNA downstream 148969 24504272 ~ 24507841 (+) True slc66a3
TU2246198 other upstream 240092 24076521 ~ 24076721 (+) True G1964499
TU2245829 other upstream 703048 23605934 ~ 23613765 (+) True G1964177
TU2245342 other upstream 1398127 22917946 ~ 22918686 (+) True G1963734
TU2244488 other upstream 1923857 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 2006012 22310344 ~ 22310801 (+) True lrrc9
TU2247044 other downstream 5134 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 5785 24361088 ~ 24361482 (+) True G1965263
TU2247195 other downstream 210428 24565731 ~ 24567147 (+) True G1965396
TU2247601 other downstream 433824 24789127 ~ 24791594 (+) True LOC110505697
TU2248937 other downstream 1476273 25831576 ~ 25833321 (+) True G1967032

Expression Profile