RNA id: XM_021585089.2


Basic Information

Item Value
RNA id XM_021585089.2
length 1976
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110505697
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24788926 ~ 24791594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCAACACACCCACTTGCCCATATTCCGGTTTCCATATTGAGCTGTAGCTACCTCCTTCTCAAACGATTTGGTTGAAAAATCTTACTAACTCTACCCACTAGAGAGCAGAATACTGTGTTCATAGCTGGAATGCTATTCGATCTAAGTGCCAGTGCGACGTTCTACGTCACGTCATCGTACCGGATGTTGATACAGAATCCGCAGGAACAGCTGGGAGAGAACAACAAAGCGACAACGAACCCAACAGACTTTGGGGAATAAAATAATTAACGTGGAAAAGGACGGCTTAGCTACAAATAGCTAAAACCCAACTAGTCGAAAAGTCTTTAAACGagaGCAGCGTTTAACCTTCCGTTTGGTCCTGCAGGTGAGTGTGTACTGAACCATGGGGCGGATCTTCCTGGACCACATCGGGGGCACACGCCTCTTCTCCTGCGCCAACTGTGACACTATCTTGACCAATCGCTCAGAACTCATCTCCACCCGCTTCACCGGAGCCACCGGCAGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACGGGCAGACACATGGTGCGAGATGTCAGCTGTAAGAACTGTAACAGCAAGCTGGGCTGGATCTATGAGTTTGCCACTGAGGACAGCCAGCGCTACAAGGAGGGCCGTGTCATCCTGGAGAGAGCACTCGTCAGGGAGAGCGAGGGCTTCGAAGAACATGTCCCCTCTGACAATTCCTGAGCTGATGCTCAAAATACTCGCTCATCCCTACGCCCCTGCCCTAACCCTCCATAGCCCCAAGCTCATTATTCCAGACACTGGTCAATAGTCTAGGCTCCACCCACAGCTTTGACCTAGCTAGGACTTTTTGACCTCTCCTGATTGGCTGGATCTCTTGATGCGTTGTTGGCCTCTCctaaacccctctctctttcaaagACCACCTTCTGTCACCTAGAGACATCGACGGGCCCGCTTTCACATACCTATGGACTCCATGCACACGTGCAAACACAGGATTTTGAAGGCAACTACACACACTGCAAGGCACACAGACTCATATTTACATACTTGACATGCTCACATGCATGATTAGTAGATGTATTCACTGACTGGATATTTTGTCAACGTTACAGCTGCAGTCACTATAACTCCCTCCCAGtgttgtgtgtactgtgtatcctTATCCTCTATCTGGCTGCTGTGCCTGTGCATGCATTGTGAGGACCTGCTTGTTGCCATGCACATCCCCACAAGTCCATCCTTCTGTGTGTGAGGAGTGCGAGCAGCCTATTGCCTCTTAGTAAGTGAGGAGCTGAGCAGGGTAGTATCATGCCCAAAGACTGGTGGCCTGCTGGGCTGGCCTTCATATGAACTGTTGCTGTTCCTCCCAATTTCTGACAATTCCCAGCCAGTTGGAATGAAGGGATCTGTGTTCTCTGTCATGCTGTTCTTTGTTTCGAATCCCTGCCCAGGTTAATGTACAATAGATAGaaatctagaagaaaaagaaacgcacacctattaagacgaggtgctggctagcggagtagataGAAATAACACATGATCATCAGAAATTATTATAATTGTATTAATGGTTAGTAtcattattgtatttttattcTCAGATGAGTCATTGTTTTAATTGGTTTGCTTTTCAAATCAGTTTATTAGTCgagtacacagatttgcaggtgtTAAAAGCacctccaacagtacagtagaatgtcacgtgaatacaatacaaatatttttttttaaatttaccaAGAAATTACAGAATGAGTATAAAAAAATATTGCTTTTATTATGATTATTGTTTTTCtttatgtatttttaaaaaacaacGTCTGATGTTTTTCTTGATATGTAAGATTGTCTCTTTTTCCAGTTATCCTGCTTGGGCAATTTTTCCTCTGTAGTGATGATTTCTGAAATAAAGTGTGTATTCTTGCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2247612 lncRNA upstream 17289 24771350 ~ 24771645 (+) True G1965763
TU2247594 lncRNA upstream 39397 24747717 ~ 24749537 (+) True G1965747
TU2247592 lncRNA upstream 69967 24714295 ~ 24718967 (+) True G1965746
TU2247588 lncRNA upstream 70944 24712035 ~ 24717990 (+) False G1965744
TU2247641 lncRNA downstream 30619 24822213 ~ 24824144 (+) True G1965791
TU2247826 lncRNA downstream 93419 24885013 ~ 24885228 (+) True G1965966
TU2247831 lncRNA downstream 96896 24888490 ~ 24888769 (+) True G1965971
TU2247858 lncRNA downstream 119714 24911308 ~ 24911640 (+) True G1965998
TU2247880 lncRNA downstream 137064 24928658 ~ 24928873 (+) True G1966020
XM_021585087.2 mRNA upstream 13513 24771814 ~ 24775421 (+) True hs1bp3
XM_021585084.2 mRNA upstream 140507 24643048 ~ 24648427 (+) False LOC110505692
XM_021585082.2 mRNA upstream 157575 24626618 ~ 24631359 (+) True LOC110505690
XM_021585081.2 mRNA upstream 171824 24595586 ~ 24617110 (+) True LOC110505689
XM_021585080.2 mRNA upstream 281093 24504272 ~ 24507841 (+) True slc66a3
XM_036962268.1 mRNA downstream 253268 25044862 ~ 25111937 (+) False LOC110504214
XM_036963023.1 mRNA downstream 326565 25118159 ~ 25185867 (+) False LOC110504215
XM_036963021.1 mRNA downstream 327755 25119349 ~ 25185867 (+) False LOC110504215
XM_036963019.1 mRNA downstream 327758 25119352 ~ 25185867 (+) False LOC110504215
XM_036963020.1 mRNA downstream 327758 25119352 ~ 25185867 (+) False LOC110504215
TU2247195 other upstream 221787 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 427452 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 427949 24360437 ~ 24360985 (+) True G1965262
TU2246198 other upstream 712213 24076521 ~ 24076721 (+) True G1964499
TU2245829 other upstream 1175169 23605934 ~ 23613765 (+) True G1964177
TU2248937 other downstream 1039982 25831576 ~ 25833321 (+) True G1967032
TU2249960 other downstream 1863311 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 2197245 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 2280821 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 2289668 27081262 ~ 27088316 (+) True LOC110505721

Expression Profile