RNA id: XM_036963025.1


Basic Information

Item Value
RNA id XM_036963025.1
length 5270
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110504215
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 25118159 ~ 25185867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATACAGCTTTGGAAACATTTGGAACTTAACTTGTATATACTTTTTCATATACAACAGATACACTTACTGTCACAGTTCAGGAAAGTTACAACCGCCTGTATTTTGACAAACATGCCATCTGACCGCAAATGTGGAATGGTCAAATGGAAATGCGAGCGCAAGGTGAGAGAATGTCATATCTGAGGCAGTGAGTGAAAACAGCCGGGTGCAACTGCTAAATTGCGCACAGTAtgtgtttaatttttttatttatttgttgccTAATTGAAAGTTAAGTTCCAAAGGTTTCCAAAACAGTATCGCTACCGCGGATTAATAACGTTTCTAAACGTTAAAACAACGTCGGGATTGTTGTTCACATGGAGCCAGCTATCCTCCATACCATCAGCAGAGAACCAAGGACCGGCTGTGAGCCACTTTGGGTTCTCAAGAGCTAATGAAGCCTTTGCTAGAGCCATATCCAAAGCATGCTTCAAATGGCCTATAAGAAAACATGTCAAATGATGGCGCTGGACGGTATACGGATGCCCGATGGCTGCTATGCGGACGGAACGTGGGAACTGAAGATGCACGTGACAGACCTCCATAGGGACGTGTCTCTGAGGGTCACCGGCGAGATCCACATCGGTGGGGTCATGCTCAAACTCGTGGAGAAACTCGATGTGAAGAAGGACTGGTCGGACCACGCCCTGTGGTGGGAGAAAAAGAAGACGTGGCTGCTGAAGACCCACTGGACCCTGGACAAGTATGGTATCCAGGCAGACGCCCGGCTCCTCTTCACCCCCCAGCACAAGCTGCTGCGCCTGCAGCTGCCCAACATGAAACACATGAAGGTCAAGGTCAACTTCTCCGACCGCGTCTTCAAGGCCGTCTCTGACATCTGCAAGACTTTCAACATCCGTCATCCAGAGGAGGCGTCTCTGCTGCGTAAGCCCCGCGAccccaagaagaagaagaaaaagctggaggaggctgaggaggCGGCTCTGGAGCTGGAGGGGCCACTGCTCACCCCTGGATCAGGAAGCATCTACTCCAGTCCAGGCCTGTACAGTAAGACCATGACCCCCACTTATGACTCCAGAGACGGCAGCCCCCTGTCCCCTACCACCGCCTGGTTCGGAGATAGCCCCCTTTCTGAGGGCAATCCCAGCATCCTTGCTGTCAGCCAGCCAATATCCTCGCCCGATATCCTGGCTAAACTCTACAAGTCCCAGTCCCTCCTGGACAAGGCCAAGATCAACCAGGGATGGCTGGACTCGTCCAGGTCTCTGATGGAGCAGGATGTCAAGGAGAACGAGGTGCTCCTCCTGCGGTTTAAATACCACAGCTTCTTTGACCTCAACCCCAAGTACGATGCCATCCGGGTGAACCAGCTCTATGAGCAGGCCAAGTGGGCCATCCTGCTTGAGGAAATAGAGTGCACTGAGGAGGAGATGATGATGTTCGCCGCTCtgcagTACCACATCAACAAGCTGTCCATCATGTCGTCAGGAAACCACATGAACAACAGTGAGAAGGAGGTGGACGAGGTGGACGCTGCCCTATCAGACCTGGAGATCACCCTGGAGGGAGGCAAGACCTCCAACACCCTGgGTGATATCACGTCCATTCCTGAACTGGCCGACTACGTCAAAGTCTTCAAGCCAAAAAAGCTGACACTGAAAGGCTACAAGCAATACTGGTGCACATTCAAGGACATCACAATTTCCTGCTACAAGAGCAAAGAGGAGGCTCATGGGACACCCTCCCTCCAAATGAATCTAAGAGGTTGCGAGGTAACACCAGATGTGAACATTTCCAGTCAGAAATTCAACATCAAGTTGCTAATCCCAGTGGCTGACGGCATGAACGAGATCTGGCTGCGGTGTGACGCTGAGAAGCCATATGCCCACTGGATGGCAGCGTGCCGCCTGGCCTCTAAGGGGAAGACCATGGCAGACAGCTCCTATAACCTGGAGGTCCAGAACATTCTATCCTTCCTCAAGATGCAGCACATGAACCCTGACCCGCAGTTCATCGCTGAGCCAGCTGTCACCAACGACATCAACTCTGAGTGCCTGGTGTCGCCGCGCTACCTGAAGAAGTACAAGAACAAGCAGATTTCGGCCCGGATCCTAGAGGCCCACCAGAATGTGGCCCAGATGAGTCTGATCGAGGCCAAGATGCGCTTCATCCAGGCATGGCAGTCCCTGCCTGAGTTTGGAATCACTCACTTCCTGGCCAAATTCCAGGGTGGGAAGAGGGACGAGCTGATTGGCATCACCTACAACCGTCTCATCCGGATGGATGCCAGCACCGGAGACGCCATCAAGACCTGGAGGTTTGCCAACATGAAGCAGTGGAATGTCAACTGGGAGATCAAGATGGTGACGGTGGAGTTTGCAGATGAGCCTAGCCTGGCTTTCATATGTGCGGAGGTGGACTGTAAGGTGGTACATGAGTTCATCGGAGGCTACATCTTCCTGTCCACGCGCGCCAAAGACCAGAACGAGTCTCTGGACGAGGAGATGTTCTACAAGCTGACCAGCGGCTGGGTCTGAGTCTGACTACTTGACCCCCTGGGTCAGAGTTTAGGgtaaagaggggagggagggtggtggcTAAATCAAATgggtttattttatttgttataaAGTTTTGGTGGTTTTAAATGGAACCATGCTTTAGAGCCCAATGCAGCCACCCATTATTGCCATTGTTGTTAAGAAGCTGATGCCCTTTATTTTTGTTGCATTAACACTAATATTCTGCGCAACGCTGCAGCCCAGACTAACTCCAAACCCTGCCTGTGGCTCCCCCATCGCCCACATTATTTGACAGGAAGTTGGGAGTCGTCCCCCTCCCATGACCCCTCTCCACTCACCCATCCCTCTCCAATGCACTGGGGACAGCAGCCTCTTCCTCAAGCAGCTATCACAAAGCTAGGTCCATGAGAACCTATCACATGTCATCAGGAGACCTCTCCATTCCAAAGACTATTTCTTAATCCCCCCTTCTACTCTGACTCCCCTGAAGGAACTGATCAAATTGACCCTTCAACCTCATCGTAATCCGACCAGCCCACAAAACCATATATCAGTTCGTATGAAGAATCACATTATTtatttatccctgttttgttTTATTGTTGTCATTTTGGTGAGGTGTGGTACTGTTCGGGGTCTTTGaagtggtgtgttgtggtttgtGTACTGCCTGACATCCTGTGTTATGATACTGTCTAATTTATGCTGCAGAGTGCCACCTCACTCTCACGTATTGTACATCCACATTCACTCAGTCTGGTGTGACTATAGGCCGTAGTAATCCGCAGAGTAAGAGTATCGGCAAAACAGTGACACGCTTTTACTTTCTCAGCAGAGACAGGAAGTGATGTGAGGTCATTTCCTTCCGTCGTTAAGGAAAGGCTAAGGAACGCAGAGCTCATGGAGAGAATTGGGCACTGTGTCCTCTCCACTCGATGAAGGATTCTCACTTTGATCTAACTAGTCCATATGAAGTCACACTTCCGCAGTAAGCACTTCTCCAGTATATGTATGATCcctggtcacactttatttggatagtctggaTTTTCCATCTGTGGATGCTCTACAGATGGCCAtgctatctgttgataagcaattCCTTGCTGAGGTAACAGTTAGGGTAATAGTTAAGtgtagaattagggttaggggagtcTGTAGCGCATCCCTTAATGAATAAGCTGTAGTTCAATTCATTGTTCTTTTTGTCTGAGCATACCTCCAGTGAGTGTCTCCTATCCTCTGTGTGAAACACTACATACAACAGCTAACAAGTGTGCTTGGAGAGTTTAAACAGCCTTGGTATACACCTACTGTAGCGCTTCTCTTGTCTGCATTAGTTAACATGTCAGCacaacaggagctcaagcagggTGAATGTCCTGTAGTTTCTTATCTGTAAACTGCTGAATAACCATGCCTAGTTCTCATAGCTACTCTCAAGGTTGAAGGGGTCACTCAAGGATACTCTGTTTGAGATGGAATTTTAATGGGTATCATGGGCAAGTTCTGAGGCAATTACTGAAAATGTAAGTAAGAATGTTGTCATGGAACATGTGGTGCCCAAATGATTTGGCTCAGATACATACTGCCAGCCATATAGGGTTGTCCAGCGTCCACAGCATGAAGGAAAGACCTCCGCTCTGCCTTGAGACTCAGACCCTTGCAAATGCATTGTGCGTGTGTAGTACAGCTGGAGGGATACTACCATTTAATAACAGCATTCCCAAGTGCAGCCTCTTTTTTTAAATGCCATTCTTTATCTTACACCATATAGTGTTATTATTCagcatcattatcattattacgCACCAGCAACAGGTCACCAAGTTTGAAGAATTAATTATGCAAAGTCTTTTTTTTCTTTGCCCTCTGTATGAACGAACATTAAATGAAGTATTAGTTTTTTGTAACTAATGTAAAAACACAGGTTTTATAGAATTGTACAGTTCTTTTGTTGCTgctttttttttcttgtttttttggggaagtgtgtttttgtttgcagaaaagagagggaaagccATCTGTCAACATTGTGTAGTATGAAAATGTGTGCCTGCCAATGTTACGGTCTTATTGAGTTTAAcatgatatagatatatatatgaaGATATCACTAGTCTCAAACTCCAGGTTGTTTGGGATTTAATTCAGATTTCTCACACTAGATATTATTACCCAAACATTGATAAAAGGGCTTTTCAATGTACTTTTTTCTTGTTGCCTCTCCTATAAGCTGAATTACATTGCTATTCTATTTTCTTGTTGCCTCTCCTATAAGCTGAATTACATTGCTATTCTATTTTCTTGTTGCCTCTCCTATAAGCTGAATTACATTGCTATTCTATTTTCTTGCATTTTGTTTGGCACTGAtctttctctctagctctgtAAACTACCACCAATGACACATCCCTAGGCTGCCAAACCCTTACTCTGCTGTTCAGTGCCTTTTCAAAAATGTATCACTTCATTTTCAGATTTGATAACTATTGTAGCTTTTAATTGAATAATATTTTTGGTATGAAGGAGACACTTTTTGTTAAAGTAGACCTTGGAGTTTGAGACAAACGGGCCGTAAGTGAACTGAAGTAAAAGAAGCGAACTTAGCCTCGTTTTTTCCTCCTATAACAGTTGTTTGCCTCCAATGTCCAGAGCAGCAGTGCATGGCCGGCTGTTTTCAGACtgtaaaaaaaatgcatttatttaaaaaaaaataaacgtttttaATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2248037 lncRNA upstream 7545 25111284 ~ 25111808 (+) True LOC110504214
TU2248042 lncRNA upstream 25445 25093618 ~ 25093908 (+) True G1966174
TU2247985 lncRNA upstream 70063 25049084 ~ 25049290 (+) True G1966120
TU2247928 lncRNA upstream 123088 24995996 ~ 24996265 (+) True G1966065
TU2247885 lncRNA upstream 186567 24932494 ~ 24932786 (+) True G1966025
TU2248508 lncRNA downstream 273824 25459691 ~ 25460030 (+) True G1966618
TU2248525 lncRNA downstream 284608 25470475 ~ 25470693 (+) True G1966635
TU2248584 lncRNA downstream 328966 25514833 ~ 25515061 (+) True G1966693
TU2248633 lncRNA downstream 408184 25594051 ~ 25678575 (+) False G1966742
TU2248634 lncRNA downstream 408184 25594051 ~ 25678575 (+) True G1966742
XM_036962268.1 mRNA upstream 7416 25044862 ~ 25111937 (+) False LOC110504214
XM_021585088.2 mRNA upstream 327759 24788926 ~ 24791594 (+) False LOC110505697
XM_021585089.2 mRNA upstream 327759 24788934 ~ 24791594 (+) False LOC110505697
XM_021585087.2 mRNA upstream 343932 24771814 ~ 24775421 (+) True hs1bp3
XM_021585084.2 mRNA upstream 470926 24643048 ~ 24648427 (+) False LOC110505692
XM_021585092.2 mRNA downstream 36131 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA downstream 36131 25221998 ~ 25329784 (+) True LOC110505701
LOC110505705 mRNA downstream 390095 25575962 ~ 25576971 (+) True LOC110505705
XM_036962269.1 mRNA downstream 813834 25999701 ~ 26089364 (+) True LOC110504216
XM_021585101.2 mRNA downstream 1251248 26437115 ~ 26520383 (+) False LOC110505710
TU2247601 other upstream 327759 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 552206 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 757871 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 758368 24360437 ~ 24360985 (+) True G1965262
TU2246198 other upstream 1042632 24076521 ~ 24076721 (+) True G1964499
TU2248937 other downstream 645709 25831576 ~ 25833321 (+) True G1967032
TU2249960 other downstream 1469038 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 1802972 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 1886548 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 1895395 27081262 ~ 27088316 (+) True LOC110505721

Expression Profile