RNA id: XM_036962269.1



Basic Information


Item Value
RNA id XM_036962269.1
length 355
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110504216
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 25999701 ~ 26089364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGACTGTGATTGCTGCAGATGAAACCAACTGTGAACCAAATGTTATGACAAAGACGCCTGACATTATCCTGGAGGTGCCAATTGCTGTGGAAGACCATATCGTCCACTGGATTGAGAGAAGGGCCTTGTTTGGGCATGACCACAGCTTTTGCACCTACCTGAACAAGCAGTTCTATAGCTACTGGAAAAGGTTTGGTCCAGGACTGGTCATCCACAGGCATGGTTTCATTGAAGAGCTggacagccagagagacagagtcattCTGCTCAAAGACTGCTTACCCTCTGATATCGTGACCGTCTGCCACGGGAACAGCCCAGTcacaactgactgactgaccggctAACACTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2249159 lncRNA upstream 14135 25985180 ~ 25985566 (+) True G1967250
TU2249154 lncRNA upstream 19566 25979922 ~ 25980135 (+) True G1967245
TU2249097 lncRNA upstream 64673 25934823 ~ 25935028 (+) True G1967188
TU2249094 lncRNA upstream 66548 25932954 ~ 25933153 (+) True G1967185
TU2249088 lncRNA upstream 71973 25927407 ~ 25927728 (+) True G1967179
TU2249260 lncRNA downstream 7875 26097239 ~ 26097440 (+) True G1967332
TU2249270 lncRNA downstream 15139 26104503 ~ 26104711 (+) True G1967342
TU2249328 lncRNA downstream 120194 26209558 ~ 26210003 (+) True G1967393
TU2249346 lncRNA downstream 146165 26235529 ~ 26235744 (+) True G1967411
TU2249347 lncRNA downstream 146932 26236296 ~ 26236525 (+) True G1967412
LOC110505705 mRNA upstream 422730 25575962 ~ 25576971 (+) True LOC110505705
XM_021585092.2 mRNA upstream 669917 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA upstream 669917 25221998 ~ 25329784 (+) True LOC110505701
XM_036963025.1 mRNA upstream 813834 25119353 ~ 25185867 (+) False LOC110504215
XM_021585101.2 mRNA downstream 347751 26437115 ~ 26520383 (+) False LOC110505710
XM_021585100.2 mRNA downstream 347752 26437116 ~ 26520383 (+) True LOC110505710
XM_036962921.1 mRNA downstream 438286 26527650 ~ 26533748 (+) False LOC110505712
XM_021585103.2 mRNA downstream 438286 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA downstream 438287 26527651 ~ 26534059 (+) True LOC110505712
TU2248937 other upstream 166380 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1208107 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 1432554 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 1638219 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 1638716 24360437 ~ 24360985 (+) True G1965262
TU2249960 other downstream 565541 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 899475 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 983051 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 991898 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 2324236 28413600 ~ 28413919 (+) True G1970001

Expression Profile