RNA id: XM_021585101.2


Basic Information

Item Value
RNA id XM_021585101.2
length 4635
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110505710
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26437115 ~ 26520383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTGTAGAACTGGTGGTCGACGCTTCCGCCCAGTTTTCCGATGTTCATTGCTCGAGTTGAAAATGGAGTTCGATTAAAGCAGATGTCCAACAACTTCTTCGGGAAAATGTAACTCACTGTATTTGCCTTTTGTATGTAAATTTCTTAATATAAATTATGTTGTACATTTTTCTAGCTGTGGAGGCTATAATTCAACGTACACCGACACATTGACGGACCAACCAGCGCTTTTTAAGTGTTGTCCTGGACCTGAAGTTGGAGAGGGGAATGCTCGATAACTAGCCACTAATAACGTGCCAAATGTCGGTTTTATTTTGTACACTTTTTAGCATCTGAACGCATTGGATTTCGTTTTACCGAAGAGGATGACGAAGATGTGCATTTTGTTGAGGTTGGATTTTACTTCCAGGGAAAATAAAATTAATGATCGGTTGTCACTCCTCGCAATTGAGTTACACAATTAGCTAGGCTACTTGGTTTTCCTAAAAGAGCTCAGTTATGCATGCACCATTGTAAGACAATTAACTTTTATACAATATCTAGTGATTTTATGCGAAAGAAAATGGTGATATTTGCGGTTTATTCCACCGCCGTCACTGCGTCCTCGATGCTATTGCCAGGATTTGGATCCCCGTGAGAAAAAATGAGCGAAGATTCAACAAATCCAAACGATGACTGCAGCAGCACAACACATAAGATGGCCAACATATGATGCAATTGAAGATCAAGGAAGATGGTGGGAAAAGAACAtGACAGTTATGCGCGTGTGAGAGCAGTGGTCATGACTCGGGATGACTCCAGTGGTGGGTGGCTGCCTCTGGGAGCTGGGGGCCTCAGCTGCGTCACCGTCTACAAAGTCAGCCGGACACCGGACAGTGACAGCAGCACCACAGCAGACTTCCTCATCAAGGGGGAGCGGCTCAAAGACAAATCGGTTGTTCTGGAGTGTATTCTAAAGAAGGACCTGGTCTACAACAAGGTCAACCCCATATTTCACCATTGGAGGATCAACGACAAGAAGTTTGGCCTGACCTTCCAGAGTCCTGCAGACGCCAGGGCCTTTGATAGAGGGATCCGCAGGGCCATCGAGGACATCAACCAAGGCTGTCCTGCGTTTGATGACTCGGACTCTCTTGAAGATGGATTACAGCCCCTGTGTGAGGCGCTGCCCTCCATCTGTACGCCAATGAAGGAGCCCTTTTCCCCCCTGAGTGTCCACAATGTGGTGTCCACTGAACCCTACCGGGGCTGCTACGTCCGCGCTCAGCCCTTTGACCAGTTTCACTCCAGCAACCACCACTACCTGCCGCCTCAGGTGTCCTTCAAGTCTACGCGCCATGTGAGCTTTCACATGGATGAGGAGGAGATTGTAAGGATCAACCCTCGTAAGGATGTTCTGATTCGCGGCTACGAGGACTACCGCCACCCAGTCATGTGGAAGCAGGAGGCAGAGCGAGAGGACCCTGACTTCCCTGCCCTATTCCACAAACTGGACAGCAAGAAGTGTGAGTACCTCTTCCCCGAGGGGCCGGGCATGGAGTCCCACTCAGGCCCTGGGAGTATGGGCATGGGCACAGGACTGGGGCTAGGGCTGGGTAAAGACTCCTCCAAGGTGCAGCCCTCACCACTGCTCAAGTCCAAAAAAGGGCGGCGGAGGAGGGAAGATGGGGAGCGTTCTCGCTGCATCTACTGCCGGGAAATGTTCAACCATGAGGACAACCAGCGGGGCCAGTGCCAGGATGCTCCTGACCCCATCAAGCAGTGCATCTATAAAGTCAGCTGCATGCTGTGTGCTGAGAGCATGCTGTACCACTGCATGTCCGACTCGGAGGGAGACTTCTCGGACCCGTGCTCGTGTGACACGGCTGACGAGCAGTTCTGCCTGCGCTGGCTGGCCCTGACGGCACTGTCCTTCATCGCTCCCTGTATGTGCTGCTACCTGCCGCTGAGAGCCTGCCACCACTGTGGGGAGGCCTGCAGATGCTGCGGGGGCAAGCACAAGGCCGCTGGGTGACCTGACTGAACTCTGACCCCTCACCTGGGATGACCTACCCACAACACAGCTAGCTGACACAGGAAAGCGGAAAAAAGCTGGGTATTCAAATGCCGGCAACCTTGTTTTTCATTCACCTCAGAGGGGGTGACATGTTGTTGTAGACGCCGGGCTCTGGAGGTCTTTTGTGTCCTTCGACGCAGAGAGCAGCGGAAGACTAACCTTGTGCTTTACGGGCTCTGAGCGTGAAGTAGAGTTCAGGAGCTGAACGTGAGGAGAAGGCATTGAGACTAGCAGACATGGAAATATTATTAAACAAACACACTTACTCACACTCGTACATAATACACACAACAACCAGGCCACCATGTCACTCTCCCTACAAGTAATGTGTAACTTTATGAAGGAATATTGTCTTTTGTACAGAGAGCAGCaactacacaacaacaacagcaaaaaaGTAAAAATTTGTGCATACAGAAAACAAACTTGAAGTCTGCTAAAAGGGATATGTTGTTGTGAACTTGTAGTTGGTTAACATTGGCAGGTCCTTTATGACTCGAGCGTTCGCTGACGGTGTAATTGTTAGAGAAGGTGCACTAGAAATGTTTATCCCCCTTCACACAATTCTAATGGTACATTAACCTTAAGACCATTCTTATTGAGTCATTTAACAGTTGCTGTGGTGGATGTGTACGTGTTTCCTTATTTTTCCTATTCATCAAATGTTGAACAAAAAAAGAAGGTAACACCTTTTCATCTTTTGCTGGTACAGTCTGACATAGCTAGATGTTAGAATGATTTCCTTGTTTTGGTAAGGTGATTTGGACCACTTAATTGCATTCCAACATAAAGTGATCAATTCCATGAGCAGGATGGAAAATATGGTAATGTCTTCTGCAATCCTCCATCCCCCGAACTAGTCAAGAATTAATGTTAGCACTTCTTGACTCACCTTCCATGAGACCAAAATGTCACAATTCCAGGTACTTTACCGGATTTTCTATTTTGACTCCATCACATCTTCGCTTCATGGTAaaactgttgtttttttatttaaagcTGAAGATTTTCTCAACCAGCAAGTTTTTCTGTTTAATGTTGGTGAGTAAGGGGTCTTGAGTGCCCCTTtgttgaacaaggcacttaaatTAGACTAGTTTGGGGAAAACCTTTTGTTTTTATTAGTCTGAAACTAGAAATTACCAACTAAAACTCAAATGTTGTGTGCAAAAAGCCAACCTTGAAAGCACTGGTCTCCAAGCTTTGGTTACAGCACCATCTTCAAATTTCAAAAGTACTTGATGTCTGTCCCCTTGTGATTTGAAGCATTTGTAACGAGTCAAATGTACTACTGTTAAGTCATTTTGCAGCTTGTCCACGGTAAGTCAGAGAATACATAGTTTAACATTTGCCCAGTCATGAATGAACAGGTACCTCATTTTAAATGTCAAAGGGCATTTGCCTATAGGTAATTATAGCATATGGATATGATTGTTTGTTACACACTATATGTGCGTAGGTCTTCATATGCAGTGAGATGTCAAGCACAGTGATCATAGAAACTGATAACTATGTTGACTCGTTGTTACAAACCTGACTTTGTTGAAAGCTGATGGGGAGATGCAGTATGAAGGTCTTTGTTGAAATCCATGTTTCACTCCGAGGAACATAGCCACAATAACTGTAGACATACCTCTGGTTGTATTCATTTGATGCTGCGTCTTTAAAAGACAGAATGTTATTGCTAATTCCACTGTTTTAAGAAATCTGTCTGCCTGTGTTCCGGAATCGTTTTTGAGAACAAAGAAATTGGTTTCTTTGATCATTTAGGCCAGCGGTGTCAGTCATTCCACGGAGGGttgagtgtctgtgggtttttgtttttttcctttcaattaagacctagacaccCAGGTTAGGGGAGTTTCTTACTAATTagttcatcaatcaagtacaagggtggagcaAAAACCCTCAGAcactccatggaatgagtttgacacgtgattTAGACAAAATCGTTATCAAAAGGATTTAAAATCACCCCTATTTAAAAAGCTTGTCATTACAGCCCTGTACTGTAACCAATAGATATGCACACCATCCCCCGGACCACCCCTTCTTGAGAAGGACGTGGCAACCCTGTCGTCGCCAGACTGGATGGGGGCAGTCAACTTCTTCCATATCCCTCTCTTATGCCCCATGCGAGGTACCAACCAACACCCTTTACTTTCTATGCAAACTGTTGGCCATGAGAAACACATAGACCTCTCCACACTGAGTCAGTGACAGGACACTTTACTAACGCTATGTAGACGTTACCCCAGGTACTAAACTCCAAGCACCTATAAATAAGTAACACTATATTTAAATACCGGATCAGAATCCCATTTTGTTTTTTGGAAATTAAAAGAGAGCTGTATTTGTCATTGCTGTCAGCATATACTGTAGCTTCAATTGACAGCATTATGTACATAGGTCACCTTTTAGTATTACTTCACATTGAAAGTGGAGGGCGTTCATGATGGAAATGACAATTAAGCTTTTAATGGAGTTTCATTCTAGTTTTCTATGAAGGGAGGAAGGCTAGAATGCTAACATGGTACAGTAGTGGCAGTccacttatttaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249638 lncRNA upstream 14047 26422776 ~ 26423068 (+) True G1967676
TU2249599 lncRNA upstream 67049 26369801 ~ 26370066 (+) True G1967641
TU2249594 lncRNA upstream 70755 26366072 ~ 26366360 (+) True G1967636
TU2249591 lncRNA upstream 72676 26364194 ~ 26364439 (+) True G1967633
TU2249586 lncRNA upstream 74921 26361990 ~ 26362194 (+) True G1967628
TU2249675 lncRNA downstream 4356 26524739 ~ 26525371 (+) True G1967713
TU2249676 lncRNA downstream 5050 26525433 ~ 26525784 (+) True G1967714
TU2249810 lncRNA downstream 18768 26539151 ~ 26539270 (+) True G1967831
TU2249847 lncRNA downstream 75884 26596267 ~ 26614385 (+) True LOC110504217
TU2249863 lncRNA downstream 97602 26617985 ~ 26618186 (+) True G1967878
XM_036962269.1 mRNA upstream 347751 25999701 ~ 26089364 (+) True LOC110504216
LOC110505705 mRNA upstream 860144 25575962 ~ 25576971 (+) True LOC110505705
XM_021585092.2 mRNA upstream 1107331 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA upstream 1107331 25221998 ~ 25329784 (+) True LOC110505701
XM_036963022.1 mRNA upstream 1251248 25119354 ~ 25185867 (+) False LOC110504215
XM_036962921.1 mRNA downstream 7267 26527650 ~ 26533748 (+) False LOC110505712
XM_021585103.2 mRNA downstream 7267 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA downstream 7268 26527651 ~ 26534059 (+) True LOC110505712
XM_021583031.2 mRNA downstream 62476 26582859 ~ 26623165 (+) False LOC110504217
XM_036962948.1 mRNA downstream 75861 26596244 ~ 26623165 (+) False LOC110504217
TU2248937 other upstream 603794 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1645521 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 1869968 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 2075633 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 2076130 24360437 ~ 24360985 (+) True G1965262
TU2249960 other downstream 134522 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 468456 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 552032 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 560879 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 1893217 28413600 ~ 28413919 (+) True G1970001

Expression Profile