RNA id: XM_021583031.2


Basic Information

Item Value
RNA id XM_021583031.2
length 3790
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110504217
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26582859 ~ 26623165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGATCAACTTGGCCCCTCCCAAGAAGGTCCAATCAGGGATGATCCAGTCTAGCCTTGTCCAGGCCAGTGAGGCGGCCATGCAGAACCCCATGGGCTGTAATTCCAAGGGGGCCAATGGCCACTGCCCCTTACCTCGGCTCTCCATCTCCTCCCGCTCCGCCAGCGTGGTGGCCAGCATGGACACAACCGGCGACCTCTCGGCCCTCCACTCTGTGATGAAGTGGAAGACGGTGGTGTCGGTTTTTGTGGTGGTTGTAGCCTTCTTGGTGGGGGGTGGCCTGGCCTTCCGTGCCCTGGAGCAGCCCTTCGAGAGCAACCAGAAGGACAGCATCACCCTAGAAATAACGTTGTTCCTGCGGAGGCACCCATGTGTCACGCCTGCTGAGCTGGAAGCACTGATCAAGCATGCCATAGATGCTGTCAGTGCAGGAGTCAGTCCGATCGGAGACACATCTTACAACTCCAGTCACTGGGACCTGGGAAGTGCCTTCTTCTTTGCTGGGACCGTGATTACAACGATAGGTTACGGGAACATAGCTCCCAGTACGGAGGGAGGGAAGATCTTCTGCATCCTGTACGCCTTATTTGGCATCCCACTGTTTGGGTTCCTCCTGGCTGGCATTGGAGACCAGCTGGGGACCATATTTGTCAAGAGCGTCTTGAGGGTGGAGAAGATATACAGGCAAAAACAGAAAGAAATAAGCCAGACCAAAATCAGAGTTACCTCCACCATACTCTTCATCCTGGCCGGGTGCATAGTCTTCGTCGGTGTCCCAGCGGTGATTTTCAAACATTTCGAGGGATGGACGACTCTGGATGCTATCTACTTTGTTGTCATTACGCTAACAACGATTGGCATCGGGGACTATGTGGCAGGTGGGGATCGGAAGATCAAGTACATGAAGTGGTACAAGCCCCTGGTCTGGTTCTGGATCCTGGTGGGTTTGGCCTACTTCGCTGCGGTCCTGAGCATGATCGGAGACTGGCTCAGAGTGCTTTCTAAAAAGACCAAAGAGGAGGTGGGGGAGTTCAAGGTCCATGCTGCTGAGTGGAAGGCAAATGTGCAGAATGAGTTCCGGGAGACGCGTCGGCGGCTGAGTGTGGAGATCCACGACAAGTTGCAGCGGGCCGCCACCATCCGCAGCATGGAGCGCAGGCAGCTGGGCCTGGAGCAGAGGACCCACTCGCTGGACATGTTCTCCCCACAGAAGAGGGCCTTGTTTGTCAGCCTGGACCAGGGCTGCTATGAGACCTCCTCCCAGGAGAGCATTGACACCAAGCTGAATAACTTGAGGTTGCGAGGGGCAGGGGAGCTTTGTTATGAGCAGCGGAGAGGCAGCGAGCAGACCCAGCAGGCCTCATCAGAGGACGATAAGCTCTTCAACCTCCGCTTCCGTTCCCTCACCAAGCTAACCAAGAGACCCAAGAACCGTGACCTGAAGAGTAACATTCCTGATGATGTGCGGAGGGCCTGCGAGGCaatggagaagagggaggaggacatggaggaggtgaaggaggaggaaaggggCGAGAGGAAGAAGGGCAACACCAGCTTGACAAATTTAGAATACGCAGACGAGCGCATTAATAAACTGAACGGTTTTGTACTGGCTCAGGCCAAAGAGAGGGAGAACGCTAGAATGTTGGAAGGAAGAGAGCTTGAGTTCCAGCTAGAGTGTGCAGATACcgagactgagtgagagagaaCTTTTTTTATGTCTCAAAATGTGCCTTGCTGTTGTTTCTATGCTTAGACTGTTCTGAGTAAATGGGACAGTTCTGTTCAAAATCAATCACTGTGCCCTAGCAATGTAAAGACTAATGTTGCCTAaaagtggagagaaaagagactAGGCTAGGGTCTAATTTGGTGAAGACCTATTTTATCTTGGATAGTACTGGACCTACCAGAATCTCCTTTCCTTTTTAAAGAACACCCACTTGCTACCcagccccaccccaccccccaacAATATCCAACAAAAAAGACGCAACGTGGGATAATCTTCTCCTTGTTAACTGAAGGTTAGCAAGTAACCCAGTGAACTAGTGTTTCACCATCCCAATGAGATTTGCACCAACTATATACATCtttacttattattattaatttcaCACCAGATATTTTTAGCCCAGGCTGCTGAACAAATATGACTTGAGGGGGAACTGGATCGATATACAATGTGTGCATTTACTGAAATTATGTGTACAATTATTGATACATTGGTTATGAAATGTAGCCCTAGGATAATCTACTAATCTTTTATAACAAAACCCTCTGATTGTGTATGCTTTTGACACTCATTTGGTGTTCTAAAGCTGTCAATATAAAGTATAGAAACTTTAAAGTTCAGGGCCAGATGTCCTGTTGTAATTTCAAACAAATGAAATGTACTGCATTAACATTTAGTACTGTTGAAGTGGAACATCTAGAAAATGAAGGGATTTTAAGGGCTGGGGTttaaaaacaattttaaaaaatactTATGAGGTTTTGATGGCCATTGAACCCAATTCATTTCTGTACATCATAAGAATGATTTATTAGTTAGacattttgttactttgttcTTTGCTTCAAGATTATTTGATGAATTATTTTACAcagcatacagtatgtatgtgtgtactgtagttTCCTGCAGTTtaatgttttctttcacagtaAATGGAATATGATTTTTCTTGTCCACACAATGTGCTGTGCACTGTATGTGTTGGTGTTTTCCCCTCACACAGTCAGACGATGCATTGCATTCACCCAGACCAGGGAAGGAACTTACCCTATGGCTGTATTCACTTCGCAGATCAATGTTTTTGGTCTTTTGCTATGTCTTTGTCTCATTGATGTTTTACTCAATGAAATGTTTGTCAATTTGTTCCAAtttgctatttatattttttgttcatttttaTTTTGCCCTATTACGGAATGGAGGTCTAGTAATCAGAAACACTTTTTGAATGGTGGCTATACAAACTTTACTCTGTCAAATACAATTACAGAATGTTTTCTGGTATGAATGAGGTAGCCTCCCCGCTGAGATTCGGATTAAAGCAGATTTTTCTAATTCATGATGTAACAAATTATTATTGGATTAGTATTTGGAACATTGAATTCTGTCTTTGGTCCCTGTGGTCTTCTGCATAGTCAAAGAAGGAGCTGTTGCTGTAGGGACGTAGGCTCACTCGTCATATCAAAACCACAACCAACAATACTGGATAGATTGCAAAGCATGTAGTTCTGATAATGAATAACTACTGTTTGTAACCTCTAAAAAAATGGCTTACCATGACAATGACCTTTCTAAGAACCCGAGTGGATTGTCTTTGCTCAGTCTTTTTTGTTGTTCACAATTTATTTGTGCAAACATTGCATCAAATGTAGTGAGTGCCTTtctgggaataaatatcactaaAGAAAATTAAGCTACTTTTGTGAAATAGTTTCTTATCAAGTGTATCATCTGTGACTTCATTCCCATGTGTCTCTTAAAGTCCACAACCACCATTATTTCCAAACCTGTGATTAACATAATTGGATTTCTGATTAAGGAAATTATGAGATTTGACTTCCAGAACAGTTTCACTTAGCTTTGCTTTCCGGTCACATTGTTGACCTTGGGTGAACTGTAAGTAAATCCAGGAGAAATTGTGATGCCTATATGATCATAGTCAGTGGCGActtgtcattcagggcaggtggttTAGCATTAATACATGCCACATATGAGTTTGcaaacaaaacaattaaatacAAAATTGGatttaataaagccgcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249810 lncRNA upstream 43589 26539151 ~ 26539270 (+) True G1967831
TU2249676 lncRNA upstream 57075 26525433 ~ 26525784 (+) True G1967714
TU2249675 lncRNA upstream 57488 26524739 ~ 26525371 (+) True G1967713
TU2249670 lncRNA upstream 71051 26510688 ~ 26511808 (+) True G1967708
TU2249638 lncRNA upstream 159791 26422776 ~ 26423068 (+) True G1967676
TU2249958 lncRNA downstream 29633 26652798 ~ 26653149 (+) True G1967963
TU2249963 lncRNA downstream 33983 26657148 ~ 26657459 (+) True G1967968
TU2249967 lncRNA downstream 39844 26663009 ~ 26663238 (+) True G1967972
TU2249969 lncRNA downstream 40377 26663542 ~ 26663792 (+) True G1967974
TU2249972 lncRNA downstream 42009 26665174 ~ 26665388 (+) True G1967977
XM_021585103.2 mRNA upstream 48800 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA upstream 48800 26527651 ~ 26534059 (+) True LOC110505712
XM_036962921.1 mRNA upstream 49111 26527650 ~ 26533748 (+) False LOC110505712
XM_021585101.2 mRNA upstream 62476 26437115 ~ 26520383 (+) False LOC110505710
XM_021585100.2 mRNA upstream 62476 26437116 ~ 26520383 (+) True LOC110505710
XM_036962834.1 mRNA downstream 278612 26901777 ~ 26904037 (+) True LOC118944312
XM_036962792.1 mRNA downstream 328975 26952140 ~ 26953607 (+) True LOC110505720
XM_021585116.2 mRNA downstream 365225 26988390 ~ 27089348 (+) False LOC110505721
XM_036962394.1 mRNA downstream 365225 26988390 ~ 27089348 (+) False LOC110505721
XM_036962395.1 mRNA downstream 365225 26988390 ~ 27089348 (+) False LOC110505721
TU2248937 other upstream 749538 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1791265 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 2015712 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 2221377 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 2221874 24360437 ~ 24360985 (+) True G1965262
TU2249960 other downstream 31740 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 365674 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 449250 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 458097 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 1790435 28413600 ~ 28413919 (+) True G1970001

Expression Profile