RNA id: TU2250152


Basic Information

Item Value
RNA id TU2250152
length 2607
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC110505716
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26716542 ~ 26765410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAGCAGCATCATTCAATGTTCTCTTCTCGTGCTGTCTCTCAAGCTCACATCCATTCTCCCGCTCTTTGCTCGCGCAGATGTCGACCTAAAGACCAGTCAACTCCATCTCTCGTCACACAATTGCCCTTTCTATGTAATTGATCGACGTTTATTTCACATTAAATTAGAAAGATCCTGTAAACCGCTGGGTGCAAAAAGACCAATGATCTTTTTGGGAATAAGAAAAACTAGTCAACCATTTTTCCATCTCTTTTTGGGTGCGTAGTTGGTTTGACTAGAGCAACAGTATGGATCTCTCATTTATGGCTGCACAGatcCCAGTCATGACAGGGGCCTTCATGGACTCCTCACCCAATGACAACTACAGTGCCGACCACTCGCTCTTCAACTCCTCGGCCAGCGTCCACGCTGCCTCTGCGGCTGCCTCAGCCCAGGCCCAGCAGGATGACCAGTCCTCGTCCAGTGATGCCATCTGGCTCTGGATTGCCATCATCGCTACTATCGGCAACATTGTGGTGGTGGGAGTGGTCTACGCATTCACCTTCTGATCCATCTCTCCTTGATGCCTACCTAGCCAAAAATTAGAGAGCCTCCCCATGGGGGAGCGTGATAAAAGACAAAGGACAAATATCACATACTGAATTATCAAAGGGCTCTGGGATGCGGATGCTGGGTATAGTGTGGGGGTTCTATAGTTGAAGCTTTAGCATCATTCACTTTCAATAGAAAAATCCTAAAGTTTCAGGACACGAACAGTACACACAGTACGCAAGTTCAACTGGAGGCAGAAGGGTATTTTCAACTTTAGTTGCCTAATTTTCAGTGGACATCATGCTCctgaatgttgttgtgttgcattgtgggGCTGAAGGGGCTTACAGATACATACAAGGTGAACTGGACCATCTTAAAATGTCCCCCAGATAGAAGAGAGGCAATTAAGAGGAGTGCTGCTTAATTATTGGGATGAACAGAGACGTGACTCTTAAAACATTTATGGGACTCTGGGATTACTTCTGCATTAGCCATGTGCTCAGCTTCTTACAGCCTGTTATCTGTTCTGCCAAAGGAAGGCTCAAAGTATTAGCTTTCCTTTGTAATATCGACAGAAAATGGACCAACGGACACTGGCTTTAATGAAACATTCCTGCATCATCCTTTTGGATCCACCAACTGTTATTGCTTCTCAGTTTCTTTAGCAATGCCACACCAGTTTATGGTCCAATAAAGACAATCACTCACCGTCTAATTTACTCTGATCACAACAGAAAATTATTTTTCTGAAAACATTATTTATTACACTAAACAATACATCTATCAATGCCATTTCACTTTTTTACAACAAACCTATATATACAACCGAGGCAGACTTGAAAGATATAAGCACAGTTTACATGAGCAGAAAAAATACTGTACAGCTTTATTTTGTCAAATCTTAATTGTTATTTAGCTACCTTCTTTGGAGTCTTTACATGCTGTATGATCTAAATAAGTGGGGTAATAGAAAGGCTGGGCGTTTTTCTATCTGTTTCCTTCAAGCTGGGTTATTTACATTCTGAACTGTTCAGTGAAATAGCTTTGTGCTGCGGTATGTCCAAAGACAGTTACAATGGCGATTAATCCACGTCCCTTAATTGAGAATATTAACAGGCTCTTTTCAAGACGCGAGCGAGGCCCCTGGTGTCACCACAACACACATTCTAGTGTACATGGATGTCAGGGAGATCATTTCTTTAGGTTATCACAGTGACAGTTCTATGAGTTTGTATCAAAATGATTGACTGATTTCTGTCTAGAACGGAACTGAAAAGAGCAAACAATACCCACGAAATGATGATGGAGATTGCTTGGTAAATGTGATGGTTTGATAAAAACATGCTCAATCTCAGCCTCTAAGCTTTCTGTTCCGCTGAGTAGAGCTGATACAGGAAAGAGTCGCTCCTTTCTTGATTTTCTTTTGTCTTCTTTCAAGGAGACGGTTGTTCTTGAATGTTGTCTGGCTTGCCTCATAAGCTGTAAGTGTAATTATCTGAGCGAGAGTAATAAACATCTATTTGAGCCAAGTTCTCTGTTATAGCCAGTGAGTTATATCAGCCACACTATCTAAGGAATTATGAATAACATTCGGATGCTGAAGTGAATAGCCATTTTCTTGTGTATACAACCTCCACTCTTGAGCTGATGCAGAATGTCAACCCACTGTGCACAGACGTCATTGAAActaaaacaacgttgattcaaccagtgtgtgcccagtgggaaaatGTATTCCATCAACCTTTTTGACATCTTTATGTAACATGATATATTATTTTAAGCTACAGGGCATCACATAGTGTTATCGATAACCTATTTAAGGATCTGGGTAGGGGCCGTTAGTATTCAATTATATTTCTTATGTGATCTTGATAAAAGAAGACTTTGTAGTAAGACTATCTACTGTAAAAGGTTGTAGAGGGTTTCTCATGTCATGGTATACACTGTACATATTGGTATTTCTACAACCTACGCAAATAACTTACTTACATTACCCAACTATGATAGAACTTCCAACAAATTGTAATATTTAAATCCCCAAATTAGGAGGTAATAATATAATGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2250037 lncRNA downstream 3336 26713044 ~ 26713348 (-) True G1968037
TU2250036 lncRNA downstream 3968 26712494 ~ 26712716 (-) True G1968036
TU2250035 lncRNA downstream 5521 26710961 ~ 26711163 (-) True G1968035
TU2250033 lncRNA downstream 6694 26709750 ~ 26709990 (-) True G1968033
TU2250029 lncRNA downstream 10538 26705726 ~ 26706146 (-) True G1968029
TU2250213 lncRNA upstream 41294 26806665 ~ 26825184 (-) True G1968195
TU2250270 lncRNA upstream 107592 26872963 ~ 26873449 (-) True G1968247
TU2250276 lncRNA upstream 112883 26878254 ~ 26878509 (-) True G1968253
TU2250639 lncRNA upstream 125741 26891112 ~ 26891434 (-) True G1968573
TU2250802 lncRNA upstream 311574 27076945 ~ 27078539 (-) True G1968706
XM_021585106.2 mRNA downstream 26735 26687049 ~ 26689949 (-) True LOC110505715
XM_021582978.2 mRNA downstream 41406 26673171 ~ 26675278 (-) False bdkrb1
NM_001124498.1 mRNA downstream 42143 26673447 ~ 26674541 (-) True bdkrb1
XM_021583109.2 mRNA downstream 50335 26636405 ~ 26666349 (-) True LOC110504332
XM_021585104.2 mRNA downstream 146234 26562132 ~ 26570450 (-) False spata7
XM_036962922.1 mRNA upstream 145407 26910778 ~ 26919460 (-) False LOC110505717
XM_021585109.2 mRNA upstream 145407 26910778 ~ 26919574 (-) False LOC110505717
XM_021585112.2 mRNA upstream 145407 26910778 ~ 26919574 (-) False LOC110505717
XM_021585110.2 mRNA upstream 145407 26910778 ~ 26925964 (-) False LOC110505717
XM_021585111.2 mRNA upstream 145407 26910778 ~ 26925964 (-) True LOC110505717
TU2249876 other downstream 177976 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 3288040 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 3494181 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 3548571 23165032 ~ 23168113 (-) True G1964564
TU2245462 other downstream 3670980 23036891 ~ 23045704 (-) True G1963846
TU2251892 other upstream 1334550 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 1378067 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 2092569 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 2757389 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 3216913 29982284 ~ 29982900 (-) True G1972454

Expression Profile

TU2250152 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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TU2250152 Expression in each Bioproject

Bar chart with 16 bars.
TU2250152 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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