RNA id: XM_021585135.2


Basic Information

Item Value
RNA id XM_021585135.2
length 2375
RNA type mRNA
GC content 0.40
exon number 11
gene id brms1la
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27854619 ~ 27858599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGGGAATGTAGTTTGTGTTCTAACCCTTTTGTACAATTACTTCATGGTGAAATTGTTGTAAAACAACTACAATTCCCTGACATCGAAATGTACGTCAATTACGCGCCATTGAACCGCTGCGATTTATCGTTTGTTTTTAGCTTGGACGCTtgcttgctggctagctagctaacgttagctagctttccATCAATGCTTACCGCTTATTCAATCAGACATACAACGATATTATTTATCTTTCTGTTTTTATATTTTGCTATTGCTATTTTTTTATACTAATCTTACCGACATATTCATGTCATCCGATGAACTGTGTAGTTTTCGAAAGATAGTTtcacttgctagctagctagctagcaagcgagCTATCTTAATTTccggtgttttttgttgttgttttattcgctaactaacgttagctttgCAACGATTTTGGAAGCTATTTCTAAAGTAAATATCTATCTCTTTTTTGTTGGAAGTACAAAATACAATTACTTTGTTAGTAGTTGAAGGTAAGGAAGTCAACATGCCGGTACATTCTCgagaaaagaaagaaagtaaCCACGAGGAGATGGAAGTCGACTATCCCGAACAAGATGGGAGCAGTTCAGACGAGGATGACACTGAGAGCTCGTCCGTGTCAGAGGATGGGGACAGCTCGGAGATGGATGATGAGGACTGTGAAAGGAGAAGGGTGGAGTGCCTTGATGAAATGACAAATCTGGAGAAACAATTTGGAGACCTGAAAGACCAGTTGTACAAGGAGAGGTTGAGTCAGGTGGATGCCAAACTCCAGGAGGTGATTGCAGGCAAGGCTTCGGAGTACCTGGACCCCCTGGCAAATCTGCAGGAGAACATGCAGATCAGAACAAAGGTTGCTGGGATCTACCGGGAGCTCTGTATAGAGTCTGTAAAAAACAAATACGACTGTGAAATCCAAGCAGCTTTCCAGCACTGGGAGAGTGAGAAGTTGCTATTGTTTGATACAGTGCAGagtgaacttgtggaaaagatcaGGCGACTGGAGGAGGACAGGCACAGTATAGACATAACCTCAGAGCTCTGGAAAGATGAGCTGCAGTCAAGGAAGAACAAGAGGAAAGATCCATTTAGTCCAGACAAAAAGAAGAAGCCAGTTGTTGTGTCAGGACCATATATTGTCTACATGTTACAAGACTTGGATATACTGGAGGATTGGACAGCAGTCAGAAAGGCTGTGGCTACTTTGGGACCTCACAGAGGTAAAACTGATGTCTCCACCAATAAGAATGAAAAGTATCAGCATAATGCTCGATCAGAAGAGGGAAAGTTGAGTTATGACGGAGAATGGTACTGCCGTGGACAGATGATATGCATCGACAAGAAAGATGAATTTCCCACAAGAGCCATAATTACCACAATCAACCACGATGAGGTTTGGTTCAAACGACTAGACGGCAGTAAATCCAAGCTGTATGTCTCTCAGCTCCAGAAAGGCAAATACACTATTAAACACTCCTAATTTTCAGGTCAACTTGCACCACTCCCTCTCCAAAGCTCAGGAGTTATTCAAAGATCCCCATGGTGCCATCTTCTGCCTATTTCAAGTTTTCTAATGAATTCTGATTTAAATacttaaaatacaatttatatgAAATACAATTTTTTGTTAATTTCGTGAGATGGGTTTGGGTCCTCTAAATAGTATTGTATGTGACTAGGTGTGAATATGACCATGTTCCAATGTCATTTTTATTGGGCAAGACAGACAGATATGGAGAACATGAGTTTCCAGACTCTGTTTCTACAGGTTTGCCTTAACAGTAGCTCAAAGCATTCAGATGAGAAAATGTACTGTATAATGGACTAACACTGCAGGATCTATAGAAAGTTACATGGGACATCAGTATAGATCAGTATATCAGCCTCACATTGACAAGTATCCATTATCTCTTGCCATACCCATCTCTGCTAGTTGTACTTTTTGTAATTTATGATACATTCTTTGTAAGTGGTACGGTACTGGTGATGACTGTCTGTATAACTTTAACACTTATGTCTTACATCTTCCAATGCAGtattcatttgtttcttgctgtctgTCTTAATGACATTCCTACATAGGGTTTTAAAATTCTAGTAAtgttcccaaaattcccaggttttccagataACCCGGTTGAAAGTGTCCCAGAATCAGAAgtgaataagcaggaaatctgccctagatttctggaaaacctgtgaattttgggaaagttaccagagctttgcaaccctacttgTACCTCACTTTGAGATGCTGTAGGTTTGCTAGAAAGGAACCACTGTCTTAATGTACAGAATAAAAGGAGCCTGCATGTTTTATATAAATAAAGGGAAAAATCTGTCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K19196 BRMS1; breast cancer metastasis-suppressor 1 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251668 lncRNA downstream 2263 27824770 ~ 27852356 (-) True G1969501
TU2251704 lncRNA downstream 109476 27742056 ~ 27745143 (-) True G1969536
TU2251623 lncRNA downstream 141602 27702808 ~ 27713017 (-) True G1969461
TU2251618 lncRNA downstream 145857 27641410 ~ 27708762 (-) False G1969458
TU2251614 lncRNA downstream 145857 27705950 ~ 27708762 (-) False G1969458
TU2251757 lncRNA upstream 25395 27883994 ~ 27885177 (-) True G1969587
TU2251791 lncRNA upstream 62706 27921305 ~ 27922259 (-) True G1969617
TU2251845 lncRNA upstream 152943 28011542 ~ 28011741 (-) True G1969662
TU2251870 lncRNA upstream 161376 28019975 ~ 28020195 (-) True G1969678
TU2251875 lncRNA upstream 169724 28028323 ~ 28028646 (-) True G1969683
XM_036962931.1 mRNA downstream 159 27732149 ~ 27854460 (-) True LOC110505731
XM_021585127.2 mRNA downstream 162044 27676570 ~ 27692575 (-) True nrde2
XM_036962214.1 mRNA downstream 162203 27676570 ~ 27692416 (-) False nrde2
XM_036962215.1 mRNA downstream 162203 27676570 ~ 27692416 (-) False nrde2
XM_036962217.1 mRNA downstream 162210 27676570 ~ 27692409 (-) False nrde2
XM_021585137.2 mRNA upstream 126951 27985550 ~ 27988951 (-) True LOC110505734
XM_021585139.2 mRNA upstream 153262 28011861 ~ 28014313 (-) True LOC110505736
LOC110504219 mRNA upstream 155818 28014417 ~ 28040025 (-) True LOC110504219
XM_021585143.2 mRNA upstream 192389 28050988 ~ 28053517 (-) True fam177a1
XM_036963135.1 mRNA upstream 207501 28066100 ~ 28087041 (-) False ctage5
TU2250152 other downstream 1089248 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1315911 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4425975 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4632116 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 4686506 23165032 ~ 23168113 (-) True G1964564
TU2251892 other upstream 241322 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 284839 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 999341 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1664161 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 2123685 29982284 ~ 29982900 (-) True G1972454

Expression Profile