RNA id: XM_036962493.1


Basic Information

Item Value
RNA id XM_036962493.1
length 6615
RNA type mRNA
GC content 0.55
exon number 41
gene id LOC110505733
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27860016 ~ 27985110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTCTCAAGCTCCGCCATGTTTTGAGATTTTGGGGAGAGGTGTGTTGTTTGGATTGCTAGCAACATTTTACATAAACTCTTATCTGCAAAATGCACACCTCTCAACGACTTTAATTTATTTGTATACATGTTATCGCCCTTGAAGGCTATTAGGTCGCAGTACATAATCAAATGATAACGGACCTCCAGCTCTCTTGTGGTTAGCAATCTTTTGAAGAAGATTAACAGGGGCTTGCTGCCTCCTACACAGATTCGTTCGTCTCCTTCTTTCGGAATGTTCTCAAAAAAGCCTCATGGGGACGTCAAAAAATCAACACCGAAAGTGTTGGATCCCAAAAAAGATGTACTGACACGCCTAAAACACCTGCGGATCGTTATAGAAAATGCAGAGTCGGGGGACCTGAAGCATTTCTTTGACCAGTACTACTCTCACATCTACTATGTGTTCTTTGAGAACTTTGTTATCATTGAAGTCGGTCTCAAACAAAAAGGTCACAAATCACAAAGGGAAGAACTTGACTCCATTATTTTCATATTCGAGAAAATTCTGCAACTCCTACCAGAGCGAATACAAGGACGATGGCAGTTCCACAGCATAGGCCTCATTCTGAAGAAGTTGTTGCACACTGGGAACTCTTTAAAGaTCCGAAGGGAGGGTGTACGTCTGTTCCTGCTATGGATGCAGGCCTTGCAAGGCAACGCACTGAGAGAGCAGCTATGGATTTTTGCCTGTCTGATCCCTGGCTTCCCATCTCCCCAGTCAGAGCTTGGCCCTCGAACCCTGGACAACCTGGTCAACCCCCCTCTCAGCCTCCAGGAGACTCAAGTTACTCCAGAAGAGATCAGTCCCCTGGTCCCTCCTCAGGCAGGGGATAAAGCCCAGGAAGACCTCACAGGATACTTTCTAGAGGCTCTTCTGAAATACATGGTAAACCAGGCCAAAAGTCTGGAGTGGAAGTGTAAAGACAACCACGAGAAGGGCTTTGCATTCCTGTTTGGAAACTTCAAGAAATATTACCTGCCGCACATATTCCCCAACTTCTCCAAGGAGACCAGTTTGTACCATCCCATACTGGAGGTTCCTTCGATGAGACCAAAGCCTTactacagtgtggtgaagaaagacCCAGAGACCAACGAGGCAGTGTACTGTACCAAGGAGAGCCTCCTCAATGCCCGCGTCATCTTCATCCGCTGGCTGGTGTCCTTCTGGCTGGAGCCACGCTCCAACACTGGAACACACATCCccggggtggatggagagagggagagcgttcCAAAGAACATCCAGAGGGCAGCAGCAGGGCTGGCAGCGCGGGGACATGGCCTGGGGGAGGACCTGGGCCCCAGGGCAGACAGCCTGGACAGAGCGATTGGGTGTGAGCAGGAGCAGTCCCACTCCAACACCTCCACCCTGACGGAGAGGGAGCCCAGCTCCTCCAGCCTGTGTAGTATGGACGAGGAGCACCTCACTGACAAGGAGGTGGTGAGACGAGTCCTCTGTTCCTCCAGGACTAACGTCAACTTCATCACCGAGGTCTTCAGACAGGCCTTCCTGTTGCCGATGTGTGAGGCTGCAGCCATGAGGAAGGTGGTGCGGGTGTACCAGGAATGGTTCGCCCAGGAGGACAAGCCTGTGTTTATGAGGGAGCCGGAGGAAGAGAGGTTCTTTACCACGGTTGGAGGGATCAACCTAGAGCCTGTAGCCCAGCAGGACACTGagaaggaggagGGGGTGAATAAAGTGTCTGAGAAAGAGCTGCTGGAGTACAGTGTGCATGCCGGTGTTCAGCCCACTCTACAGGTGTTTGTCACCAACTCTGCCAACGTTTTTCTGCTGGAGCCAGCCAACGAGCTCAAGGTGTTGCTGGAGGAACATGTTGACATGTGCAAGAGAGTCCTCAACATCTACCGCAGCCTGGTCATGCATGAAACCATGGACCAGAAGACATGGGAGCAGATCTTGCTGGTGCTGTTAAGGGTGACTGAGTGTGTGATGAGGAGACATCCCTCCATCATGCCCCATGGCAAGAAGAACATCACTCTCTCTGGGAGGCTGGCCGGGGCCGTCTTTCAGACCTTGATAGTGGCCTGGATCAAAGGGAACCTGAACGTGTACATCTCCAGGGAGCTGTGGGACGACCTGCTGGCCGTGCTGTCCTCGCTCACCTGCTGGGAGGAGTTGGTTACAGAGTGGTCCCTCACCATGGAGACGCTCACCAAAGTTCTGGCCCGCAACCTGTACAGTCTGGACCTCAACGAGCTGCCCCTGGACAAGCTGAGCGAACAGAAACAGAAGAAACACAAGGGAAAAGGGGGCGCTCACGAGGGCCAGAAGACGGCTGTGGGCCATTCGTTCTCTAAGGGCTGGAGCAGGGACCAGCCTGGGAGCGGTCAAGCAGCAGCCATGAGGCAGCGCAGTGCCACCACCGCTGGCTCCCCGGGTATGGAGAAGGCCAGGAACATCATGCGCCAGAAGACTGTGGATATGGAGGACCCCCCCATGGTCATGGCCTCTCGGGCACCCAGGATCCGCCACTGCTCCCAGAGCGAGAATACCCCGGCCTCTGAGGtgttctcagcatccagtgaccTGGAACCCCAGGGGCCTCCGCTCCCCCGCAGCAGCAGCGCTTCTGACATCATGGAGCCCTTCATCGCTGAGAGGGTCAAAGGCAACAAAGAGGACCCTTGTCAGACGATGCGTCCTGTGTCCAGTGACAACGGCAACCAAAACTTTGGAGACCTGATGGACGAATTTATCCAAGAGCGTCTGCGAGCGAGAGGCACCTCGggcATGACGAGGCGTGGCAGTAGCCCCTGTAGTCTGGAGATCCCCAAAGACCTGCCGGAGCTCCTGGGCCGTCAGAACGTCTCACAACCCGTGGACGACCCCGGTGTGCCCTCTGAGTGGACCTCCCCCGCCAGCAGCAGCGACGTCATCAGCTCCGACAGCCAGTCAGACTCCTTCAACGCCTTCCAGTACGCCAACTGCAAGTTGGAAAATTTCAGCTTTGGTCCAGATGGCTGTGGTGCTGGGTCTTTGGACCAGGATAACGCTAGCCTTGGAGGGCTGCCCCAGACTGCAGAGGAACAGGAGCTGTCCAGCCTCACCACCCTGCACATAGATTCAGAGACCAGCAGTCTGAGCCAACACGGCCTGTCTGCAGACGCCATCACCAtcacagGTTCAGAGAGTGCGTCCCCGATGCATTCCCTGGGTGGTTCCTGCTCACAGAGCCCGTCTCCAGCCACCCTGACCGCTGAACACATAGGGCTGCAGCACGAGGACCTGCAGCTGGATGAGAAACTACATCACTCTGTACTACACACTCCTGATGACCTggAAACCAGTGAGTTTCCTACAGAGGACTGCAGTGTGATGGCCGGTGGCTCCCTGACCGGTTGGCACGCTGACGTTGCCACGGTGATGTGGCGGAGGATGCTAGGCATTCTGGGTGATGTGAACACCATTAAGGACCCAGAGATCCACGCGCAGGTCTTTGACTATCTCTGTGAGCTGTGGCAGAACCTGGCCAAGatCAGAGATAATCTGGGCATCTCTCTGGACAACcagtcatctcctcctcccccggTCCTCATCCCTCCCCTCCGGATCCTCACCCCCTGGCTCTTCAAAGCGACCATGCTGACAGAGAGGTACAAACAGGGGAAGCTACACGCCTACAAGCTCATCTGTAAGATCATGAAGAGGAGGCAGGACGTTTCGCCCAACTCAGACTTCCTCACACACTTCTACAACATCATGCACTGTGGCCTTATGCACGtcgaccagGACATAGTGAACACCATCATTAAGCACTGTTCTCCTCGGTTCTTCTCCATCGGGCTGCCTGGAGCCACCATGCTTATCCTGGATTTCATCATCGCAGCCAGCAGAGTCACAGCCTGCTCCTCCCTCAATgCCCCACGGGTGGAGGCTCAGATCCTGCTGGGTTCTCTGGTGTGTTTCCCTAACCTATACGAGGAGCTGCCTGCCCTACACCCCACCACTGCTGACGTGGTCATGACCAAGTTCAGAGACGTTAAGGAACACATCATCAAACACATCCTGAGTTCAGCCATAGATGAGCCTTCAGCCCCAGCCAGGTGTGTTGCCCTGTGCAGTCTGGGTATCTGGCTGTGTGAGGAGTTGGTCCACGCCACCCAGCATCCTCAGATCAAAGAAGCCCTCAATGTCATCTGTGTCACTCTAAAGTTTCCAAATAAAACTGTCGCGCTGGTGGCCTCCGACATTCTGCACTTGCTCATAAACTATGTCGATGACCTTCAGAAATTCCCCCTCGACACTCCAAAGAAAATAGTTGAGATCCTCATAGCGACTATCACTCACCTGCTTCCCACTACAGAATCCTCGCCTCATGAACTGGACAAGAGGTTGGTGGTGTCTCTGCTGTTGTGCCTGCTGGACTGGGTGATGGCTCTGCCTCCTAAAACTTTGCTGCAGCCTGTCCAAACCCTCAGCCCTGACAAGGAGAAGCCAGACAAGTCTGTCCTCAGCTGTATCTACAAGGTGCTGCATGGCTGTGTGTATGGGGCCCAGAACTTCAACAGCCCTAGGTATTTCCCTATGAACCTGTCAGACCTGACCAGTCCAGACTACGACCCCTTCCTGCTACTGGAGAGTCTGAAGGAACCAGAGCCCCTCCACTCCCCTGACTCAGAACGCTCCTCCAAACTACAGCCTGTCACTGAGGTGCGGAGCCGTATCCAGCACGGTCTGATCTCCATCGCTGCCAGGACAGTCATCACCCACCTGGTCAACCACCTTGGGCACTACCCCATGTCTGGAGGCCCTGCTACCCTGACCAGCCAGGTGTGTGAGAACATGGACAACCCCTACAGCGATAGCCCTGACCTGGCCCCAGAGCTCTTTGATGGGCCCAACCTACAGTTCTTTGTCCTGAATGGCACCACCCTCCTATCCTGTCTGCAGGTCCGTGCTGAGGACGGTGTGCCTGGTGGAGGAATGTCTGCAGGCCTCACCACCACCAGTGCCTGTGTGAGGGTTATCGTCCGAGACATCTCCGGAAAACACTCGTGGGATTCGGCTGTGCTGTACGGGCCACCTCACTGTGGTGTTCCCAATCAGCCCCTGCACCTCTACAGTAACACACCAACAGAGAGAATGactacagagagggagaaggagaagaactGGGTTGGAGACCCTAtagagaaggaagaagaggagagggaagaggaggaggaggtggtggtgttggtgctgggagaggaggagcagggggaggctgtggaggaggaaggagaggaagaagaggaggaagtggaAGGTGTGTTGGAGCTCATGGCCCCGCAAGCTAAGCGTGTGTGTCGCGAGGCGGTCCCGTCCTGGAACTCCTTGCGAGAAGATGATGTTCTAGATGAGATACTGCAGTACCTGGGTTACTCCAGCCCCGAGTGCCTTCAGCGTGCCGGAGGCCCCCTTAACATCCCCGCCCCACCCCCTGTCTGCGTGTCGGAGAAGCAGGAGAACGACGTGATCAACGCCATCCTGAAGCAGTGTGCAGAGGAGAGGGACTTTGCGGTGCACAGAGGGAATGGGCTGAACATGAGAGCCGTGGAGCAAGGGGAGCCAGGGCCTCAGAGGCCCCAGTCAGCCTTCTACTACTGCAGGCTGCTACTCAACATCCTGGGCATGAACTCCTgggagaagagGAGCAACTTCCATCTCCTGAAGAAGAACGAGAAGCTGCTTAGAGAGCTTAAGAACCTCGACTCCAGGCAGTGTCGAGAGACGCACAAAATAGCTGTGTTTTACGTGGCAGAGGGGCAGGAGGACAAGCACTCTATCCTGTGTAATACCAGGGGGAGTCAGGCCTACGAGGACTTTGTCtctgggctgggctgggagGTGAACTTGACCAGTCACTGTGGCTTTATGGGAGGTCTTCAGCGGAACAAGAGCACTGGTCTGACCACGCCTTACTTTGCCACCTCCACCGTTGAGGTCATGTTCCACGTCTCCACGCGGATGCCCCCAGACTCAGACGACTCACTCACCAAAAAGCTAAGGCATCTTGGGAATGACGAGGTACACATTGTGTGGTCTGAGCACTCGCGGGACTACAGGAGAGGCATCATCCCTACGGAGTTTGGAGACGTCCTCATCATCATCTACCCCATGAAGAACCACATGTACAGCATCCAGATCCTCAAGAAGCCAGAGgtACCGTTTTTTGGGCCCCTGTTCGATGGAGCCATAGTGGATGAGAAGATCCTTCCCACCATGGTCCGGGCCACGGCTCTCAACGCCAGCAGGGCTCTTAAATCCCTCATCCTCCTTTACCAGAACTTCTACGAGGAGAGAGCGCGTTACCTGGAGACCATCGTACAGCACCACCTGGAGCCAACCACCTTCGAGGACTATGCAGCAAGAGTCTTCTGCCCCgctccctacctccacctcccGTCAGACCCAGGCTCATGCCTCGAGAGTCAGCAGGGAGAAAGTCCAGCAGCAGCGCTTCTAGACGGGGCCGACCAGTTAGCCTTGCCAATGTCCCCTCGTACTAGCAAGAGCCGTATGTCCATGAAGCTCCGACGCTCCTCCGGCTCGGCCAACAAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251418 lncRNA upstream 3297 27856282 ~ 27856719 (+) True G1969276
TU2251322 lncRNA upstream 45101 27727847 ~ 27814915 (+) False G1969198
TU2251502 lncRNA downstream 31038 28011861 ~ 28014274 (+) False G1969356
TU2251503 lncRNA downstream 31038 28011861 ~ 28012680 (+) True G1969356
TU2251516 lncRNA downstream 56205 28037028 ~ 28037245 (+) True G1969369
TU2251399 lncRNA downstream 81053 28061876 ~ 28065667 (+) True LOC110505741
TU2251404 lncRNA downstream 84903 28065726 ~ 28066649 (+) True G1969263
XR_005039596.1 mRNA upstream 138915 27715100 ~ 27721101 (+) False LOC118944371
XM_021585131.2 mRNA upstream 151254 27694848 ~ 27708762 (+) True calm1a
XM_021585126.2 mRNA upstream 189602 27664997 ~ 27670414 (+) True LOC110505726
XM_036962397.1 mRNA upstream 758466 27099673 ~ 27101550 (+) True LOC110505722
XM_036962396.1 mRNA upstream 760306 26988390 ~ 27099710 (+) False LOC110505721
XM_021585138.2 mRNA downstream 25627 28006450 ~ 28009481 (+) True nfkbiab
XM_021585141.2 mRNA downstream 60778 28041601 ~ 28051126 (+) True ppp2r3c
XM_021585155.2 mRNA downstream 77369 28058192 ~ 28065666 (+) False LOC110505741
XM_021582987.2 mRNA downstream 113682 28094505 ~ 28099259 (+) False gemin2
NM_001160644.2 mRNA downstream 113732 28094555 ~ 28099255 (+) True gemin2
TU2250361 other upstream 771700 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 782876 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 803349 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 1204680 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 2026695 25831576 ~ 25833321 (+) True G1967032
TU2252207 other downstream 432777 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 1493297 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 2342690 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 2649505 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 2656231 30637054 ~ 30655039 (+) True G1972244

Expression Profile