RNA id: XM_021585137.2


Basic Information

Item Value
RNA id XM_021585137.2
length 3402
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110505734
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27985550 ~ 27988951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTTGCGCGTCACCCGACCTCCCCACTTGTCGGTGCTGATTGGACAGGGCTTGGCCACAAACTGTgacttcacaaaaaaaaactgaaGGCGACCCCAAAGATAAAAAACAATGCAAGCTCATTGATGTGACAGagtcctccgtccctctctcctgtcACCAGTCACCTCGCCCGTGCGCCTTTCATCTGAAAGGGACCGCGAGCGCTCCTTCGCTTCAAAGTGGACACGGGAACCGTTCCATTCCGGCGTAAAGATGCCCAGAGGATTTTTAGTGAAGAGGAGCAAACGCGGCTCAGCGGCTTCTTACAGAACGCGTAACGACGACAACTTAATGCCAAAAGCGGACCTGCCTGTGAATGCACCGGAGTGGACAACCGGTGTGCCAACTGCGTGCCCAATTGTGCCGTtatccgaggacagtacatttgaAGAACCATGGACCAGTGCCCCGGCTGAAGCGGACCAGGCGCAGCTGCCAGAGAGCGCAGACAAGGTGGAGATTAGAGAGGACTTTGGGAAATACCCACCACACCATCCCCGCACTGAGCCGGACCACGACGGATCTCCGGGGCGGGCTGACCTCTCCTATAGCCCGATAAAACCAGTTGGCGCTGTAGTGGAAAAATCGTCCCTTGACCGGTGTATGAGTTCACCAACAGTGACAGAGCCGTACGCAATGAGCACGCCGGTGTCTTCAATAGAGAGACTTCTTCTAAATCACGCGCCCTTTGGACACTCTGATATGAAATTCGACCCACCTGTGCACCTCTACCAGTCTTTCCATCATGCTATGAAACGCACGTACATGGAGCAGGAGCGCAAGATCAAGCCAGCAGCCAAGAAGCCTAAAGTAATCCGGAAACTCAGCTTCGAGGACGAAATCTCCACCTCACCCGTGCTTGGGCTGAGAATTAAGAAGGAGACCCCCGAATTTAAAGCAGCTACCGCATCTTCTGCTAATAAGAAACCGCTGGGAGAATTCATCTGCCAGCTCTGCAAGGAGGAATACCCTGACCCGTTCTCCCTCGCACAACACAAGTGCTCCAGAATTGTGCGCGTAGAGTACCGCTGTCCCGAGTGCGACAAAGTTTTCAGCTGTCCTGCCAACCTGGCCTCTCATCGCAGGTGGCATAAGCCTCGTCCTGTAAACCACAGAGAGGCACAGAGCGCCAAAAAGTCACAGCCGGAGGCACGGCTGCATGAGAGGACTTTCGTGGAAGGGAAAGAGAACGCGAGCGAGTTGAGAGTTAACAATCAGCACCACGTTTCTCTGGACAGCTCCGCGTGTCAGCGGGATGTCACCGTGGACAGCTCCCACAGACAAGAGCAGCTGCGCAGGAGGGTACAGGAGAGCCCGCAGCCCTTCGATCCGCGCTACCGGGACCCAGATAAAACTATGGACCTGCACATTAGAGCGGGTGACAGCCCAGGCATAATGCATTGTCCGGAGACCACCGACGTGGCACTGACCACCTCTTCCTTCTTAAAGACCTCCGGGACAGTAGAGGAGATTTACGAATGTCACTATTGCAGCAAGAAGTTCCGACGACAACCCTATCTGAGGAAACATCTTGCGGCGCATGAGACAATCAAAGCCTCGACCTATAACCAGATAGAGAGTGGGCAAATCACGTTTCCCTGTCACTTGTGCGGTGCCCATTTCCCATCCACTGAAATTTGGGACAAGCACAGAGTTTGGCATGCAATGAGAGATGACATTCTGATGAATCCAGGGAAGATTGCGGGTAGACCAGACTTGGTAAGACCAGAATTAATAAGACCAGACCTCATACAGGGAGACCAACAGATATTCACCTGTAAGCACTGCCCATCTACCTTCTTCAGTTCTCCCGGGCTTGCCAGGCATATCAACAAGTCTCACCCCACAGAGATCCGGCAGGTGATGCTTCTACCAATGGCAGTCAGACCCGACTGCTAGTAGCCTAGTCTAGGCTGATGTAGGCAAGTCTagcccagggtttcccaaactcagtcctggggtcacgtttagtttttttgtcctagcactacacagctgattcaaataatcaaaacatgatgagttggttatttgaatcagctgtgtagtgctatggATAAATACAAAATGTgcaggggggggggcaggaccgAGTTTGAAAAACCCTGGTCTTGGCTACAGACTTACTGGAATGCTGAAACCCCTGAAAAACAAGTGGATTAATTAAATACATATGAAAGTATGAATGTGTTCTTTTTACTACATGTGTGATTGTATTGTAACTTATTATACTACCTGATCAGGTCAAAAACAATAATGGCATTTCTATTTTCATGACAAGAGAAACGTTTTTTTGCAATGACAGATTACAGCACACTAATAGCTGAATAGAGCCACATTGTAACACTTGCTTTTGGGCCTATATTCACTAATGTACATTATTGATTGATTTACAGTGTTATGATTTGTTAAAACATTTAACAGTAAAATTGGGCATATCAAAAGTTTCAAATATTTTAGAGTTGTCATTTTAAGCATGTAATGAAAATAAGAGGGTGGCCCTTTGAATATTACAAGAGTATCAGACCTCACTGCCTTTATCTTAATGTAGTTCCTATGGAAATTGAATGTGCTTGTTCAGTATAGTTGTGGAATTGATTTCTAAACCGGCAAGGCTATCAAGATGTATTTTCATACAGAAAATCAAGTTTACCTGTTAGAGTATTAAACTGTTtgagttaaatatatatatatttattctcTGAAAAGTACTTGCTAAAAAAAACGCCTTCATGGTGATGATTGTGTTACAATTATGATGTTGTATTTTGATATGTAGTGAACGACATTTACATTGATTGTCAATAAACACAAGTCTATGTGCATACCAGTGATGGCCACTATACAGTATTTTTCGGTTTAATACACAATGAGGCGCTAAAAAGTAGAAAAAAAAGCCCATTCGGCAttattaccagaatgctaacaaaattagcacaagtaATAGCAAACTTCCATAGAGactgctagctaaatatgcttACGAGCGCAAATGAAAGTAAACTAATTGCAAAGGCAGGCAATCCAGCTCAGAAACGTATACATATATATAGGTAGTAGCTACCGAATTTCCTTTTTGGTGAGTTTGGATATTTACAAGAAAATGTGAATgagagacattgtgcaaatgaacaacgTTTGGATgcatgcttgtctgaaggaagaacagaACTGGAtctggagcagcatgtgtacacgctGTGTCTGTATGGAGTCTGAAGAAGCTAGGGCAACAGGCCTGCCTGCTCTGCTTGGAGAAGAGGGCGGAGGAGCAGTCTAAATAAAGCCTTAACTGAGAGGAGAAAATAACGCAAGGACATCAAGATGGCAGTGGCAGCTGTACAGATAACTCATCCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251791 lncRNA downstream 63291 27921305 ~ 27922259 (-) True G1969617
TU2251757 lncRNA downstream 100373 27883994 ~ 27885177 (-) True G1969587
TU2251668 lncRNA downstream 133194 27824770 ~ 27852356 (-) True G1969501
TU2251704 lncRNA downstream 240407 27742056 ~ 27745143 (-) True G1969536
TU2251614 lncRNA downstream 276788 27705950 ~ 27708762 (-) False G1969458
TU2251845 lncRNA upstream 22591 28011542 ~ 28011741 (-) True G1969662
TU2251870 lncRNA upstream 31024 28019975 ~ 28020195 (-) True G1969678
TU2251875 lncRNA upstream 39372 28028323 ~ 28028646 (-) True G1969683
TU2251878 lncRNA upstream 41262 28030213 ~ 28030716 (-) True G1969686
TU2251885 lncRNA upstream 65138 28054089 ~ 28054386 (-) True G1969692
XM_021585135.2 mRNA downstream 126951 27854619 ~ 27858599 (-) True brms1la
XM_036962931.1 mRNA downstream 131090 27732149 ~ 27854460 (-) True LOC110505731
XM_021585127.2 mRNA downstream 292975 27676570 ~ 27692575 (-) True nrde2
XM_036962214.1 mRNA downstream 293134 27676570 ~ 27692416 (-) False nrde2
XM_036962215.1 mRNA downstream 293134 27676570 ~ 27692416 (-) False nrde2
XM_021585139.2 mRNA upstream 22910 28011861 ~ 28014313 (-) True LOC110505736
LOC110504219 mRNA upstream 25466 28014417 ~ 28040025 (-) True LOC110504219
XM_021585143.2 mRNA upstream 62037 28050988 ~ 28053517 (-) True fam177a1
XM_036963135.1 mRNA upstream 77149 28066100 ~ 28087041 (-) False ctage5
XM_036963136.1 mRNA upstream 77149 28066100 ~ 28087669 (-) False ctage5
TU2250152 other downstream 1220179 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1446842 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4556906 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4763047 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 4817437 23165032 ~ 23168113 (-) True G1964564
TU2251892 other upstream 110970 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 154487 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 868989 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1533809 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 1993333 29982284 ~ 29982900 (-) True G1972454

Expression Profile