RNA id: XM_021585141.2


Basic Information

Item Value
RNA id XM_021585141.2
length 1780
RNA type mRNA
GC content 0.45
exon number 12
gene id ppp2r3c
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28041601 ~ 28051126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATAAGAAGAAGTCGCTAGCCGACCAATCCCAAGCGAGCTAACGATTGTTTAGACATTTCAGAGAAGCTGAAAAAATAAGTTATCATAACATTGATTAGCTTGTTTTCATGTTATTAGGAATAAACATAAGTTAAAATGTCAAACGATACGGTAGTACACTGGAAGGAACTTTTGAAAAGAAGATTGGCATCCTCCAAGAAAGATGAGAGgactgaggaggagaagaaagcagAGGAGACAGCACTCTTCACTAAATACTACacagagtggaggggtggaggcaaCAGAGAGAACTACAGGAACATTCCACGCTTCTACTACAGGCTTCCTGCAGAGGATGAAGTTCTCCTGCAGAAGCTGCGAGAGGAGTCCAGAGCCGTCTTTCTGCAGAGGAAGAGCCGGGAGCTTCTGGACAATGAGGAGTTACAGAATCTGTGGTTTCTGCTGGACAAACATCAAGTGCCACCCATGACAGGAGAGGAGGCAATGATAAGCTATGACAGTTTTCTGAAGGTTGGAGAAAAAGCCGGAGTTAAGTGCAAGCAGTTCTTCACTGCCAGGGTGTATGCCAAACTTCTCCACAACGATCCATATGGCAGGATATCAATTATGCAGTTCTTTAACTATGTCATGAGAAAAGTGTGGCTTCACCAGACGAGGATAGGACTGAGTCTCTATGACGTGGCTGGACAGGGCTACCTCCGTGAGTCTGACTTGGAGAACTACATTTTAGAGCTGATTCCCACACTCCCTCAGCTGGATGGCCTGGAGAAGTCCTTCTATTCCTTTTATGTCTGCACCGCTGTCCGCAAGTTTTTCTTCTTCCTGGATCCCCTACGGACTGGGAAAATTAAGATTCAAGACATCTTGGCCTGCAGCTTTTTGGATGATCTACTCGAGCTGAGAGATGAGGAGCTTTCCAAGGAGAGCCAGGAATCCAACTGGTTCTCTGCACCCTCTGCTCTTAGAGTTTATGGTCAGTACCTGAATCTTGACAAGGACCACAACGGCATGCTCAGTAAGGAGGAGCTGTCTCGCTACGGCACTGGCACTCTGACCAGCATATTTCTGGACCGCGTGTACCAGGAGTGCCTCACCTACGACGGAGAGATGGACTATAAGACGTACCTGGACTTTGTCCTGGCTCTGGAGAACAGGAAGGAGCCTGCAGCGCTGCAGTACATCTTCAAGCTGCTGGACATGGAGAATAAGGGCTACCTCAATGTCTTCGCACTCAACTACTTCTTCAGGGCCATTCAGGAGCAGATGAAAATCCATGGCCAGGAGTCGGTGTCCTTCCAGGATGTCAAGGATGAGATCTTTGACATGGTGAAGCCAAAGGATCCCTACAAGATCACGCTGCAGGATCTAGTGAACAGCAGCCAAGGAGACACAGTAACCAGCATTCTCATTGATCTCAACGGATTCTGGACTTATGAAAACAGGGAAGTTCTGGTTGCTAATGACAACGACAGCAACACAGCTGACCTTGACGATACATGAATCTTCAGTCAAACTGGGGACTACTAGACTCAGCAAGAAGAAGATAAATGTTACGGTAAAGATTCTAGACACACTCACTGGAACTcagttgtttaaaaaataacttgtCAAGACTTCGAAATACAACAGTTGTATGACCTGTTTAAATGTTTATTAATTTAGTGTACATAGTATAGAAAATGAAAATACTATGTATTTTACTCTAAAAATGACTATAAAAAGCCTTCAAATGAAACTGTTTTTCCATTAACACATTATAAAATGATTTTACATAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251516 lncRNA upstream 4356 28037028 ~ 28037245 (+) True G1969369
TU2251502 lncRNA upstream 27327 28011861 ~ 28014274 (+) False G1969356
TU2251503 lncRNA upstream 28921 28011861 ~ 28012680 (+) True G1969356
TU2251418 lncRNA upstream 184882 27856282 ~ 27856719 (+) True G1969276
TU2251322 lncRNA upstream 226686 27727847 ~ 27814915 (+) False G1969198
TU2251399 lncRNA downstream 10750 28061876 ~ 28065667 (+) True LOC110505741
TU2251404 lncRNA downstream 14600 28065726 ~ 28066649 (+) True G1969263
TU2251531 lncRNA downstream 65445 28116571 ~ 28116774 (+) True G1969384
TU2251534 lncRNA downstream 79356 28130482 ~ 28130702 (+) True G1969387
TU2251545 lncRNA downstream 92072 28143198 ~ 28143576 (+) True G1969397
XM_021585138.2 mRNA upstream 32120 28006450 ~ 28009481 (+) True nfkbiab
XM_036962487.1 mRNA upstream 56491 27860016 ~ 27985110 (+) False LOC110505733
XM_036962488.1 mRNA upstream 56491 27860016 ~ 27985110 (+) True LOC110505733
XM_036962493.1 mRNA upstream 60778 27860016 ~ 27980823 (+) False LOC110505733
XM_036962490.1 mRNA upstream 60793 27860016 ~ 27980808 (+) False LOC110505733
XM_021585155.2 mRNA downstream 7066 28058192 ~ 28065666 (+) False LOC110505741
XM_021582987.2 mRNA downstream 43379 28094505 ~ 28099259 (+) False gemin2
NM_001160644.2 mRNA downstream 43429 28094555 ~ 28099255 (+) True gemin2
XM_021585154.2 mRNA downstream 48528 28099654 ~ 28106376 (+) True pnn
XM_021585156.2 mRNA downstream 497422 28548548 ~ 28601863 (+) False LOC110505743
TU2250361 other upstream 953285 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 964461 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 984934 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 1386265 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 2208280 25831576 ~ 25833321 (+) True G1967032
TU2252207 other downstream 362474 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 1422994 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 2272387 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 2579202 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 2585928 30637054 ~ 30655039 (+) True G1972244

Expression Profile