RNA id: XM_036963134.1


Basic Information

Item Value
RNA id XM_036963134.1
length 5321
RNA type mRNA
GC content 0.46
exon number 28
gene id ctage5
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28066100 ~ 28094235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACGTTAATCATTACTCCTCAGTTACCTTGTATCTTGATTCCCTCCTCATTTAGCCATTGAAACATGTTTACTTGTTGAGATGTGACTGCAACAACTTGAAGGCAATGTTCATTTGGCACAATGGAATTCAACGCGACATGACTATTCAACTTGGAACACCATTTCACCACAGTTTTTTAACTACCCAGTTTCACTGTGGACCATTCTACATGACTGGACTTTCCAGGGTCGATATGGCTGCTTCACAGATATACATTTGGACATTTACTATTTTCCTTTTTCCAACTCTAACTTGGGGATTGCTGTCTGACTTCAAAATTTGTGGCGACTCTGAATGTGAAAGCTTGCTGAGTCGGGTCAGGGCCACAAGAGATCACAGAGGAAAGGATTGTAGATTCCTGAACTTCAAAAAAGGGGATGTGATATTTGTTTACCACAAACTCTCTGGCAAAAGAGATGATTTATGGGCAGGAAGTATTGACAGACGATTTGGTTATTTCCCAAAATACGCTGTGAAAGTTGATGAAATTTATGCAAGCACAGAGACAGAAGTGGCCACACAGAAACAAGACTTCTTCTGCATAGATGAGTATGGCTCATTAATTGATAATGACTCCAGTGAGTGGGACAATGAAGAAAATCTAGTTTCAGAATTTCAGGAAATCGCAGCCAATGATGCTCAGGATTCTAAAACTTCAAAAGATGCCTTTCTGTCCCAAAGTTTTGCACAGAGCAGTGATGAAACAGGAAACAAAGATGCCATTCAGGTTGTAATGGAAGACTTCCTTGATGATACCAAACCTGAACCTAGCGAACAAGATGGGTCTCAGTGGATTGGCTCTACAGTAACTGGATGGCTTAGTTTAGGTGGTGAAAACTCTGATGATAATCCCAAAGAAGACAACCCAGAACAAGACTCTTTCAGGAGCAGGAAACTTGCTTTGGACATTGATGCGAACCAATTGAAGGAAGAGAAGAAAAATGCTGAAAACTCTGGCTGGTTTGGAGATGGACTGACTAGCGCCTTTGGTTTTGGTCAAAAAGCTCCAGAAGAGGAGAAGCCCATTGAAAAGGAAGTGGAAGAGAAACCCCCACCCTCTAACTCCTGGCTGAATATTGGCATTAGAGATGTCTTACATTTTGGTCAATCTAATCAGGATAAGGTTGAAGAGAGAATAGAAGCAGCAGGCAGAGATGAATCGACAGGCACAATAGACCCACAGGACCTTGGCACAAGTCAGTCTCATCATGATGCCACAGTGGAGCAAATAAAAGAAACAGAGCACCAGAGAGAAGATACCACTGCAGGAACAGACAAGACAAACTGCATCAATGATGATTGTTTCACTCGCAATGAAAACGAAGACCTAACCAACCTGAAAGGAGAACATTTCTCTGGGGAGGGAGACATCCAAACCCCAACACTAACAGACAAATataaACCTGAGCCTGCAGTGATGGAATATCTTTTTTCTTCTGCACGTCAAGTCACTGGTGATGCTGTTGCTCATATGCTGACAGTTAAGGCTCTTCTAAAATGGCTCATTTTACAGGTCCTGTCATCCCTTCCTGATGACATAAAGCCAGGTCCTGACCTGTATGGACTGCCATGGGAAGCGGTCATCGTCACTGCCTTACTAGGGTTGGGCACCCTCCTATTGTTCAGCTGCAGGTTCTACCAATGTATAAAGAGCAGACTGTATTCAAGCAAAGAGAGGCGGATGGGCCTGAAGGTGGCTGAACTATTAGATGAAAAGTGCAAAGTCCTTGAGACTTTGAGTGAGGTTCAACAAAATTATGAAGAACTGGAAACTGCCCTGCGGAATAGTGGTGTTTTGGCTcatgttgcagagagagagaatctggaGGTGATGTCCCAGAGGCTGAAACAGTCAAATACACAGCTTGGAAATGATATAGAAAAGTTAAAGGAGGACCTGAATATCCAAAGAGCGAGGAGGTTGCAGCAGGAGGAGACAATTGCAGATATGCAGGAAACCTTGAAAACCTTAGAAGAAGAAACCAGGGACCTCAAGTCCCAGACAGAACAGGCACAGACAACCCTGAAAATATTTGACATGAACAGTGAAAGGAATCAGAATAATCTGGAGGCAGCAAAAGAAGAGAAGGTGTTGCTCCAGGAGAAAAATGGCCAGCTGGTCCAGGAGGCAGAGGGCTGGGGGGAGCGGATGAGTgagctggaggaggagatgaggatgtgTGAGAGCTCCTACACTGGAATGCTGCAGGATGCTACCAACAAAGATGAGCGCATCAAGtcCTTGACAGACTGCCTGTTGAAGATGAAGGACTGGGACCCAGTGCTGGAGGACGGCgccaacagagaggagaggagtgggacaCAAGGGACAGAGAATGGAGAAGGACATGATAACCATCAACGACGAAGAATACAGAAACTCATTCATGCAGCCAAGatgAATGCAGACTTGAAGTCGGTGGATGAAGACAAGGACAGGGTGTTTGCTAAGCTAGCAGATGAAGTCAAGGCCAAGGAGGACCTCCAAGAGGGGATTAAGAAACTGGAGAATGAGAAGGCCTCtctgcagacagacagtgagaagtACACGGGCCAGGTGCAGAAACTCCAGCAGAAACTGCAGATCATGACAGAGATGTACCAGGAGAATGAGCTCAAACTACACAGGATGTTgactgtggaggagagggagcgTCTTCAGAAGGACGAGAAGCTGACCAAGGCTGACAAGAGCATCACCCTGGCCGTGGAGGAGCTCAACAGCTACAGGCAAAGGGCACAAGACCTGGAGGATGAGCTGGAGAAGACTAACCATGCTTACAAAACCCAGATAACTTCTCAGGAAAAGAAAGCACACAATAACTGGCTAGCAGCACGAGGTGCTGACCGCGACCTGGCTGAAGTTAAAAGAGAGAATGCACACCTCAGGCAGAAATTGACTGATACTCAGTTCAAGCTGGATGTTGTGGAGAAAGACCCCTATACACTGGACAACATGGACAGACCTCTGTTCAGAGGTGAAAGGTCACCGTATGGCCCCTCCCCCCTACATCGCCCCGCCTCTGAGAACAGAGCCTTCCTGTCTCCGCCTACCCTGATGGATGGCCCACTCCGCCTCTCTCCAAACTTCCCACCCGTGGGACCAGGAGGCAGAGTATCCCGAGGCCTGTTAGATCCCCCTGGTGGGGTGGACTCTGATCGTAGTGGTGGTCCTCACTCTGACAGCGGCTCGATATCTCCCACCTGGGAGAGGGATCGCAGGGGCCCACCTATACACCCTCCAGGGTATATGTATCTAGACCCAGGCCTTCCCTACAGGAGACCTCTGCCCGGAGCCCTTCCTATGGGCCCCCTTCCACCCAGGGGCCCCGGTCCTGCTGAGCCCCACAGCTTTGGCCACCAACCTGACTCGTCATTTATGGGAAACAGTATGGGTCCTGGTGAAAATGAAAGAGACTCCCATCTGTCAGCACCTGGAGATCTGCGAGACATGAGGATGGGACCTCCTCTCTTAGTACCCCCTGGTATGGGTCCCCTCCCACCCATGGACCACAGGGACCCTTACTTTGCACGCAAAGGCCCTTACGGACCTCCAGACTTTTTCTCCCCACGAGGTCCAGCCCCCATGGGCATGCGAGGACCACCTCCCCCGGGAATGTTCGGGCGAGTCCCCCCTCCACCACCGCAGCATATGGGGTACCCTCCCATGAGGCCCCACCCAGACAGTTTTCCCCCTGGACCCCCTCCAAGGCCCTCACCACCTGGCAGTGAAGTGTCTTCGGACCAATCTCCCTCTCCACATGATGTCATCTGAGCCATCTCTCTCTGTGCGGGAGAAACTCTCTTGGCCCGCTTCCTGTGTGAAACTTAATTTcctgttgttgtgatagtagtgAGCGACTGAGCGTGTGTTCAGGGACTGTTTCCTGAAGTGTAACTTCAACATTCATATGACTCTTTCTCCCTTTTCTAGAGGCTGGTAGTGGAATTATttcccccacagtctgttgcacacacaaacatagatcACTGTGTCTTAGGACTTAATGAGAGAACAATACAGTACCACTAGGAGTTTTACACAACTGGAAGTACTGAGCGATCATTTATGTAAGTTTTTTTTTGTAGCTTCACATAGCTGTATGAGTCATAAATActcataaaacctagcagtcaaacagggaattGTTTCCAGCTGTTTTTCCGACCATTTTTCTCATAgggaattttagaaacactttaAAATGGATGAATCGAGGCAAAGGTTATGAATCTCTATTAAAGATCAAATTTTCActaaatgtatactgaacaaaaatattaacacaacatgCAAGAATTTCACTGaaagttcatatgaggaaatcagtcaattgaaatgaattcattaggccctaatctatgcatttcacatgactgggaatattgATATGCAACTGTTGGACATAGTTACCTTAAGAAAAGGGCTTCCCGATCATGTCATGGCATGtcatttctgtgcattcaaattgcaattgATAAAATGCTATTTTgcttatgcttgcccataccaAAACCAAGTTCACAACATAAACATCAGCAAACTGATCAcccacatgacaccatacacgtggtctgcggatgCCAAATTCTCTAAGACGGCTGAGGCAGCTTACTGGTGAGAATAGCTTTGGTGGGCATTCCAATtgaacgctccctcaaaacatctgtggcatgtggcaactgcacattttagagtggccttctaTTGTCCAATGACAATGCTGTTTAATATGCcactcaggtggatggattatcttggcagaggagaaatgctcactaacagatgtGTGCAAAACATTTGGAGAatttcaggagtcttattgcaGCTCGTGAAACATGGGCCCAACACTTGCTGcgtttcatatttttgttcagtgcagtAATACATTGGCTACATTTCTGTAAACTGTCTTgagcaagttttaaattgacattaCCTGTTGGCAAAGGTGTCACCTAAAGATGTTCAGGGGCTTGCAGGGATTTGCCATTTTGCATGATGTCTAGTAATTAGCATTTTTTTATCTGAATAAATAGAGCCGACTATATGTCTCCTTTGTCCAAGAgtgttatcaaaatgtcacgccagggtaagcctacacagcCCTTAAGTGTTTCTGAAATCCCTACAGGAAGTGGGAAAATAATTTCTCTGACcactaggtgttatgggtatgatGACTCTATAGCTATGTGAATCTGCCTTGTTCTGAGTGGCGACTTGGACTAACTTGAAGAGTGCGTTTGCTTGTCTTGTTAAAGGCCTTTTAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251862 lncRNA downstream 1794 28061625 ~ 28064306 (-) True G1969670
TU2251860 lncRNA downstream 5584 28059868 ~ 28060516 (-) True G1969668
TU2251888 lncRNA downstream 7358 28058238 ~ 28058742 (-) True G1969695
TU2251887 lncRNA downstream 8377 28057505 ~ 28057723 (-) True G1969694
TU2251885 lncRNA downstream 11714 28054089 ~ 28054386 (-) True G1969692
TU2251896 lncRNA upstream 14429 28108662 ~ 28109006 (-) True G1969703
TU2251902 lncRNA upstream 22627 28116860 ~ 28117211 (-) True G1969709
TU2251903 lncRNA upstream 24251 28118484 ~ 28118699 (-) True G1969710
TU2251905 lncRNA upstream 26579 28120812 ~ 28121067 (-) True G1969712
TU2251906 lncRNA upstream 27057 28121290 ~ 28121604 (-) True G1969713
XM_021585143.2 mRNA downstream 12583 28050988 ~ 28053517 (-) True fam177a1
LOC110504219 mRNA downstream 26075 28014417 ~ 28040025 (-) True LOC110504219
XM_021585139.2 mRNA downstream 51787 28011861 ~ 28014313 (-) True LOC110505736
XM_021585137.2 mRNA downstream 77149 27985550 ~ 27988951 (-) True LOC110505734
XM_021585135.2 mRNA downstream 207501 27854619 ~ 27858599 (-) True brms1la
XM_021585158.2 mRNA upstream 1019382 29113615 ~ 29122177 (-) False LOC110505745
XM_036962820.1 mRNA upstream 1019382 29113615 ~ 29122177 (-) False LOC110505745
XM_036962821.1 mRNA upstream 1019382 29113615 ~ 29122177 (-) True LOC110505745
XM_036962824.1 mRNA upstream 1041128 29135361 ~ 29169633 (-) False daam1a
XM_036962822.1 mRNA upstream 1041128 29135361 ~ 29191453 (-) False daam1a
TU2250152 other downstream 1300729 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1527392 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4637456 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4843597 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 4897987 23165032 ~ 23168113 (-) True G1964564
TU2251892 other upstream 5688 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 49205 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 763707 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1428527 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 1888051 29982284 ~ 29982900 (-) True G1972454

Expression Profile