RNA id: XM_036962819.1


Basic Information

Item Value
RNA id XM_036962819.1
length 1899
RNA type mRNA
GC content 0.42
exon number 12
gene id ccdc175
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29106207 ~ 29114965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactcaagtagtactttactgggttactttcacttttacttcagtcattttatattaaggtatcttgACAATTGTCACTATCTCCACCACTGGATTTAAATACATATTTATAAATTGTGTTATTTCACCCAACACTCTTCCTTCATTGCAGCACATTGTCCAGTTAGAGCAAAGTATAGCCAAACTGACAGCGTCTGAAATCCAATACAAAGAGCAGCTGGCAGACGAGATCAACACATTTGAGGAACTTGTTCTTCAGAAGTAAGATTTGCATTCATCCAGGTACTGTATGTTGCGTAAGCATGGAGCATACATGGAATGCAagggatactgtatgttacaACATGTCTGCTTCCATCATTCCAGATTTTTCGACTCATTAACCATTGTTTCCACAGGGAATTTCATGTAAAGGAGTTGGCTGAAGTGAGAATTGTATTTGAACTGAAAGTTCAGGCACTACAGGAAAAGATTGTAGAGGTGGATGGTGAGATGGAGGAGGGCCAGATAGTGAATGCCATCCGCCTGGAGTCTATTGCTAAGATGTCTGACAGATTTAAAGCTCAAAGGAAAGAGGAGGACGACGTCATGGCTGAACACCTCAATGTCTCAAGACGCTTAGAAAAGTCCAGACTTAGACTTGAGGAGCGCATTGCATCGATTGCTAAACATAAAATTGAGATCAGAGAAATGGATGAAGAGATCAAACAACTCCATGAAACCAATATAGTTAATGCAGACCTGTTTGAAAGAAATGTGGAGGAACTGCATGGACAGCTCAATAAAGAAAAGAACAACATAGCGATCTTTGAAGTTGAAAAAGAAGTACTGTGCCAGTCTCTGGAGAATCTGAAAAAAGATCAAGTACAGCATGTGAAAGAGGTCAACTCTAATATTGGTTTAACCAGGAGGAGATATGAGGAACTGCTTGAAGAGGAGAAGAAACTCAGAGAGCATGTATTCATGGGCGCGTTGATTGAACGTCTCAGTAACAAGATTGTTAAGGCAGAGGAGGGGTATGAACAGATGACCATTTCCTACAATGCCGAGATCCAACAGTTCATcACTGAAGCGGAGTCAGTGATACAGAGCCgactggagaaggaggaggacctGAAGGGTAAAGAGTCTATCTTGGAGGATGCGGAGGCCCAGTTTGACATTGACCAGTCCAGGCACCAAAAACTAAAAAACCATACCTCAGAGTTAAAGAGTAAGAACAATCATCTGGAGCTCTTCATCCAGGATATGAAAGAGAGGACTAGTACTCTTCTCAAACCAAAGGAGGACATGAAGAGGAGTCTAGAGGGTTTGCGTGAGAAACACATGGAGCTGCTGACGTCTCACACTGCAAACATCATCGCCACGGAGAAGAGCATCTATGACAACGGGATGATGCTGGAGCAGGTCAATATGGAGAACAGTAGACTGCATGTGTGTATTGAACAAATGAAGGAGGACATATGGAACACCAGGAAAGACCAGGAAAGACACACAAAGGAGATTGGGTGGCTGAAAGAGGAGGTTCATTCTCTATTTGAGAGCCTGCTTGATGCTTGGGCAGAGGACACTGTGGTGACTGAGGAATCTTCAGAGAGAGACCACAAGATTCTGGAGGCTATCTACAGACTCATGACCAAGATCCACGACAGGAAGTTCCAACTGGGGGATATCaacagtagactagaggaggaaCTGAAGGGCATGAGTTCCCTGTTAGCCAGTAATAAATCAAACATTGCACTTAAAGAACAGGGCAACTAAAGTGAGATATCAAGAAGGATTACATCAACACAATTGTTTTGTTATAAAAAAACTCAGCACAAGTGAAAGTCATATGAGATGAAAGTAGATGAGTACACACTTCTGATTTTATTTCAGAAAAATCATACTTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253076 lncRNA upstream 55532 29050463 ~ 29050675 (+) True G1970843
TU2253050 lncRNA upstream 74369 29031426 ~ 29031838 (+) True G1970817
TU2253026 lncRNA upstream 99593 29006365 ~ 29006614 (+) True G1970793
TU2253022 lncRNA upstream 101456 29004390 ~ 29004751 (+) True G1970789
TU2253016 lncRNA upstream 105714 28999776 ~ 29000493 (+) True G1970783
TU2253139 lncRNA downstream 18069 29131733 ~ 29136833 (+) True LOC110505748
TU2253147 lncRNA downstream 30203 29143867 ~ 29144796 (+) False G1970898
TU2253148 lncRNA downstream 30203 29143867 ~ 29144796 (+) True G1970898
TU2253175 lncRNA downstream 62740 29176404 ~ 29176711 (+) True G1970921
TU2253300 lncRNA downstream 99046 29212710 ~ 29212925 (+) True G1971035
XM_021583111.2 mRNA upstream 165 29101062 ~ 29106042 (+) True LOC110504335
XM_021585156.2 mRNA upstream 504344 28548548 ~ 28601863 (+) False LOC110505743
XM_021585154.2 mRNA upstream 999831 28099654 ~ 28106376 (+) True pnn
XM_021582987.2 mRNA upstream 1006948 28094505 ~ 28099259 (+) False gemin2
NM_001160644.2 mRNA upstream 1006952 28094555 ~ 28099255 (+) True gemin2
XM_021585160.2 mRNA downstream 15379 29129043 ~ 29132925 (+) False LOC110505748
XM_021585171.2 mRNA downstream 158338 29272002 ~ 29274608 (+) True gjb9a
XM_021585176.2 mRNA downstream 207670 29321334 ~ 29326173 (+) True adprs
XM_021585184.2 mRNA downstream 212610 29326274 ~ 29334901 (+) False LOC110505757
XM_021585182.2 mRNA downstream 212612 29326276 ~ 29334898 (+) False LOC110505757
TU2252207 other upstream 692288 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2017891 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2029067 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2049540 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2450871 26654905 ~ 26655336 (+) True G1967965
TU2253384 other downstream 360456 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 1209849 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1516664 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1523390 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1545740 30659404 ~ 30679995 (+) True G1972245

Expression Profile